PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_6555_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NF-X1
Protein Properties Length: 1117aa    MW: 121142 Da    PI: 8.0969
Description NF-X1 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_6555_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-NF-X1231.7e-07301319119
                             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                          CG+H+C+++CH GpC+pC+
  cra_locus_6555_iso_1_len_4035_ver_3 301 CGRHRCKRICHVGPCDPCQ 319
                                          ******************6 PP
2zf-NF-X117.58.8e-06365383119
                             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                          CG+H C ++CH+GpC++C+
  cra_locus_6555_iso_1_len_4035_ver_3 365 CGNHACLEICHPGPCGECS 383
                                          ******************6 PP
3zf-NF-X1186.2e-06423441119
                             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                          CG H+C++ CH G C pCp
  cra_locus_6555_iso_1_len_4035_ver_3 423 CGVHRCKEMCHSGACAPCP 441
                                          ******************9 PP
4zf-NF-X116.42e-05519537119
                             zf-NF-X1   1 CGkHkCqklCHeGpCppCp 19 
                                          CG+H+C +lCH G CppC 
  cra_locus_6555_iso_1_len_4035_ver_3 519 CGQHSCPSLCHSGHCPPCL 537
                                          ******************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF578501.59E-6123193No hitNo description
PROSITE profilePS500168.653131192IPR019787Zinc finger, PHD-finger
PROSITE patternPS013590134189IPR019786Zinc finger, PHD-type, conserved site
PROSITE profilePS500899.244134190IPR001841Zinc finger, RING-type
CDDcd060084.88E-6223284No hitNo description
SMARTSM004380.42246264IPR000967Zinc finger, NF-X1-type
PfamPF014227.7248263IPR000967Zinc finger, NF-X1-type
CDDcd060081.09E-11291339No hitNo description
PfamPF014226.2E-6301318IPR000967Zinc finger, NF-X1-type
SMARTSM004387.6E-5301320IPR000967Zinc finger, NF-X1-type
CDDcd060082.35E-8355398No hitNo description
PfamPF014222.1E-4365383IPR000967Zinc finger, NF-X1-type
SMARTSM004380.0075365384IPR000967Zinc finger, NF-X1-type
CDDcd060088.82E-14413461No hitNo description
PfamPF014221.5E-4423441IPR000967Zinc finger, NF-X1-type
SMARTSM004387.4E-4423442IPR000967Zinc finger, NF-X1-type
PfamPF0142218481492IPR000967Zinc finger, NF-X1-type
CDDcd060081.41E-9509561No hitNo description
PfamPF014226.1E-4519536IPR000967Zinc finger, NF-X1-type
SMARTSM004386.6E-4519538IPR000967Zinc finger, NF-X1-type
CDDcd060082.12E-5566614No hitNo description
PfamPF014226.9576593IPR000967Zinc finger, NF-X1-type
SMARTSM004380.019576594IPR000967Zinc finger, NF-X1-type
PfamPF014220.77629644IPR000967Zinc finger, NF-X1-type
SMARTSM004380.23629647IPR000967Zinc finger, NF-X1-type
CDDcd060087.83E-5657706No hitNo description
PfamPF014228.1661687IPR000967Zinc finger, NF-X1-type
SMARTSM004380.023668689IPR000967Zinc finger, NF-X1-type
PfamPF014242.2E-4800864IPR001374R3H domain
Gene3DG3DSA:3.30.70.3303.1E-4912955IPR012677Nucleotide-binding alpha-beta plait domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009642Biological Processresponse to light intensity
GO:0009651Biological Processresponse to salt stress
GO:0009697Biological Processsalicylic acid biosynthetic process
GO:0010188Biological Processresponse to microbial phytotoxin
GO:0010310Biological Processregulation of hydrogen peroxide metabolic process
GO:0042742Biological Processdefense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0000166Molecular Functionnucleotide binding
GO:0003676Molecular Functionnucleic acid binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 1117 aa     Download sequence    Send to blast
MSLPVQSNRR DNNHSRSRNR NNPVQTARHE WVPRGSTPTA TVTTTEVSPR LAVDNVNGNG  60
SNGDSGTMLV PPANHNRTNQ GFRGSRGQHP FHWREREKEK ERDHTKDDKG SKNVNIPLLV  120
QEIQDKLTRN AVECMICYDM VRRSAPIWSC SGCFSIFHLS CIKKWARAPT SVDLSAEKSQ  180
GFNWRCPGCQ AVQLISSKEI RYVCFCGKRH DPPSDLYLTP HSCGEPCGKP LEKEIPGAGM  240
SKDDLCPHLC VLQCHPGPCP PCRAFAPPRR CPCGKKVITT RCSDRKSVLT CGQICDKPLE  300
CGRHRCKRIC HVGPCDPCQV LFNASCFCQK KTEVVLCGDM ALKGEIRVEN GVFSCNSTCE  360
KKLNCGNHAC LEICHPGPCG ECSMLPSKIK TCCCGKTSLK EKRESCVDPV PTCSETCEKL  420
LPCGVHRCKE MCHSGACAPC PILVTQKCRC GSTSRTVECY KTQLENEKFT CDKPCGRKKT  480
CGRHRCSERC CPLSSSNSSG AVNWDPHFCS MPCGKKLRCG QHSCPSLCHS GHCPPCLETI  540
FTDLTCACGR TSIPPPLPCG TPSPSCQYPC SVPQPCGHSS THSCHFGDCP PCTIPIAKEC  600
IGGHVVLRNI PCGSKDIRCN KLCGKTRQCG LHACARTCHP PPCDCPTEPA VGSRASCGQT  660
CGAPRRDCRH TCSALCHPSA PCPDLRCEFP VTISCSCGRI TANVPCDAGG NNSGYTADTV  720
LEASILHKLP APLQPIEGTV KVPLGQRKLM CDEECSKMER KKVLADAFGV AAPNLEALHF  780
GETSVVSEVL SDLLRRDPKW VLSVEERCKY LVLGRGRGGL NALKVHVFCP MLKEKRDAVR  840
LIAERWKLSV NAAGWEPKRF VVVHVTPKSK APVRMLGVKG CVAGSLLQPS VFDPLVDMDP  900
RLVVSLFDLP RDADISALVL RFGGECELVW LNDKNALAVF SDPARAATAM RRLDQGSIYH  960
GAAVVPHSGG SSAAVSGPNA WGSTGGTRDG NAVAALKSNP WKKAVMQEPD SRESAWDAEE  1020
WSDDSGDGRS SVWKGKEAPT PIAATNRWSV LESETTSSSS SKGTSHKEDH PSNRPGSPLA  1080
SASDPGTSSP VLQTKQEGGA DLDEMSDVVD DWEKAYD
Functional Description ? help Back to Top
Source Description
UniProtMediates E2-dependent ubiquitination (By similarity). Confers resistance to osmotic stress such as high salinity. Promotes H(2)O(2) production. Negative regulator of some defense-related genes via an salicylic acid (SA)-dependent signaling pathway. Confers susceptibility to the compatible phytopathogen Pseudomonas syringae pv. tomato strain DC3000 (Pst DC3000). Mediates resistance to type A trichothecenes (phytotoxins produced by phytopathogenic fungi). {ECO:0000250, ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By brassinosteroids, osmotic stress and high salinity. Accumulates in response to SA, ethylene, methyl jasmonate (MeJA), flagellin (e.g. flg22), and type A trichothecenes such as T-2 toxin and diacetoxyscirpenol (DAS), but not in response to type B trichothecenes such as deoxynivalenol (DON). {ECO:0000269|PubMed:16905136, ECO:0000269|PubMed:18069941, ECO:0000269|PubMed:19704430}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027125745.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_027125746.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_027125747.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_027125748.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_027125749.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_027125751.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_027125752.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_027125753.10.0NF-X1-type zinc finger protein NFXL1-like
RefseqXP_027167534.10.0NF-X1-type zinc finger protein NFXL1
RefseqXP_027167535.10.0NF-X1-type zinc finger protein NFXL1
SwissprotQ9SY590.0NFXL1_ARATH; NF-X1-type zinc finger protein NFXL1
TrEMBLA0A068VER70.0A0A068VER7_COFCA; Uncharacterized protein
STRINGXP_009622484.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA93132428