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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6529_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 261aa MW: 28720.1 Da PI: 6.0321 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 108 | 130 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C+ C + F ++ L H++ H cra_locus_6529_iso_1_len_1625_ver_3 108 FPCNFCQRKFYSSQALGGHQNAH 130 89*****************9988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 3.33E-6 | 106 | 135 | No hit | No description |
PROSITE profile | PS50157 | 11.094 | 108 | 135 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 110 | 130 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 261 aa Download sequence Send to blast |
MGLLKFDLEK AATSDDNSDI CSQVASNISV QEPYLLAPRV IVSDSSQVTD LSTPISSGPF 60 ELDLSLSFKS KTDELAGKDS IGISVSSTSE SSNEPTTQTT ATAAPRVFPC NFCQRKFYSS 120 QALGGHQNAH KRERTLAKRA MRMGIFSERY ANLASLPLHG SSFRSLIKTH SSMHPGFAPS 180 GRPLYFRTNA RFEQGYLTQP IYVEEEPELL WPGSFRQVAA DRDNSQPSFI LTGSSNSNLN 240 FLEVNPSLEK DELTPDLTLR L |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Acts as negative regulator of abscisic acid (ABA) signaling during germination and early seedling development. {ECO:0000269|PubMed:24808098}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027079490.1 | 1e-114 | zinc finger protein 4-like | ||||
Refseq | XP_027079491.1 | 1e-114 | zinc finger protein 4-like | ||||
Swissprot | Q39263 | 1e-40 | ZFP4_ARATH; Zinc finger protein 4 | ||||
TrEMBL | A0A068TZJ2 | 1e-111 | A0A068TZJ2_COFCA; Uncharacterized protein | ||||
STRING | GLYMA14G39280.4 | 3e-92 | (Glycine max) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA1283 | 23 | 47 |
Publications ? help Back to Top | |||
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