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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6447_iso_5 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 498aa MW: 51383.2 Da PI: 6.2537 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 11.2 | 0.0011 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + cra_locus_6447_iso_5_len_2394_ver_3 95 WKCDKCSKKYAVQSDWKAHSKIC 117 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 7.3E-4 | 83 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.64E-5 | 90 | 139 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 498 aa Download sequence Send to blast |
MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD XXXXXXXXXX 60 XXXXXXXXXX XXXRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR 120 EYKCDCGTLF SRRDSFITHR AFCDALAEES AKTQTVEAPP SADTDPKLQS PASSPPPPPP 180 PPPAAEPAPP APPPCTAVIQ SSTLPIETPE EPENPNKNPT SPQILEEVSA MTTLTAGCSS 240 SSSSSCSGST TSSVFASLFA SSTATESLQS SSSGFTDLFR AVARPESTSE VIPSSSTEPI 300 SLCLATNQGS SIFGTAGQER RQYAPPPQPA LSATALLQKA AQIGAAATNA SLLRGFGIVS 360 SSSSTTGQQE WSGRPIESDN GLAAGLGLGL PCDGGSGLKE LMLGTPSVFG PKHTTLDLLG 420 LGMAAGAGPT GGLSALMTSI GGGLDVATAA ASFGGSEYTA KDLGRGSXHG XFSANQSILL 480 VVYGGRYEVA TDLAQKCT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 1e-35 | 91 | 156 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 1e-35 | 91 | 156 | 3 | 68 | Zinc finger protein JACKDAW |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269|PubMed:21571950, ECO:0000269|PubMed:25035403}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074557.1 | 0.0 | zinc finger protein GAI-ASSOCIATED FACTOR 1-like | ||||
Swissprot | Q9LVQ7 | 1e-106 | IDD1_ARATH; Zinc finger protein ENHYDROUS | ||||
TrEMBL | A0A068U3D8 | 1e-174 | A0A068U3D8_COFCA; Uncharacterized protein | ||||
STRING | VIT_04s0023g01430.t01 | 1e-172 | (Vitis vinifera) |
Publications ? help Back to Top | |||
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