PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Function |

Orthologous Group |

Publication

Basic Information? help Back to Top

TF ID

cra_locus_6447_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 517aa MW: 53016.7 Da PI: 5.4723

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6447_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	17.2	1.5e-05	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H cra_locus_6447_iso_4_len_2450_ver_3 67 FVCEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.160.60	1.7E-5	66	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE profile	PS50157	10.949	67	89	IPR007087	Zinc finger, C2H2
Pfam	PF12171	8.3E-5	67	89	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 517 aa Download sequence Send to blast
MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD AEVIALSPKT 60 LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KDVKKRVYVC PEPTCVHHDP 120 SRALGDLTGR LIQRFVGLES INVIVGLCFQ GGIALSPTGL FXDALAEESA KTQTVEAPPS 180 ADTDPKLQSP ASSPPPPPPP PPAAEPAPPA PPPCTAVIQS STLPIETPEE PENPNKNPTS 240 PQILEEVSAM TTLTAGCSSS SSSSCSGSTT SSVFASLFAS STATESLQSS SSGFTDLFRA 300 VARPESTSEV IPSSSTEPIS LCLATNQGSS IFGTAGQERR QYAPPPQPAL SATALLQKAA 360 QIGAAATNAS LLRGFGIVSS SSSTTGQQEW SGRPIESDNG LAAGLGLGLP CDGGSGLKEL 420 MLGTPSVFGP KHTTLDLLGL GMAAGAGPTG GLSALMTSIG GGLDVATAAA SFGGSEYTAK 480 DLGRGSXHGX FSANQSILLV VYGGRYEVAT DLAQKCT

Sequence ? help Back to Top

Protein Sequence Length: 517 aa Download sequence Send to blast

MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD AEVIALSPKT  60
LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KDVKKRVYVC PEPTCVHHDP  120
SRALGDLTGR LIQRFVGLES INVIVGLCFQ GGIALSPTGL FXDALAEESA KTQTVEAPPS  180
ADTDPKLQSP ASSPPPPPPP PPAAEPAPPA PPPCTAVIQS STLPIETPEE PENPNKNPTS  240
PQILEEVSAM TTLTAGCSSS SSSSCSGSTT SSVFASLFAS STATESLQSS SSGFTDLFRA  300
VARPESTSEV IPSSSTEPIS LCLATNQGSS IFGTAGQERR QYAPPPQPAL SATALLQKAA  360
QIGAAATNAS LLRGFGIVSS SSSTTGQQEW SGRPIESDNG LAAGLGLGLP CDGGSGLKEL  420
MLGTPSVFGP KHTTLDLLGL GMAAGAGPTG GLSALMTSIG GGLDVATAAA SFGGSEYTAK  480
DLGRGSXHGX FSANQSILLV VYGGRYEVAT DLAQKCT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074557.1	0.0	zinc finger protein GAI-ASSOCIATED FACTOR 1-like
Swissprot	Q9LVQ7	1e-121	IDD1_ARATH; Zinc finger protein ENHYDROUS
TrEMBL	F6GWY3	0.0	F6GWY3_VITVI; Uncharacterized protein
STRING	VIT_04s0023g01430.t01	0.0	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA103	24	350

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755]