PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6447_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 179aa MW: 19614.5 Da PI: 8.6912 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.0003 | 95 | 117 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 +kC +C+k + +s+ k H + + cra_locus_6447_iso_2_len_1080_ver_3 95 WKCDKCSKKYAVQSDWKAHSKIC 117 58*****************9876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.8E-4 | 83 | 116 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 1.85E-5 | 91 | 132 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 179 aa Download sequence Send to blast |
MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD XXXXXXXXXX 60 XXXXXXXXXX XXXRALGDLT GIKKHFCRKH GEKKWKCDKC SKKYAVQSDW KAHSKICGTR 120 EYKCDCGTLF SRRDSFITHR AFCDALAEES AKTQTVEAPP SADTDPKLQS PAVLAVVEV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_C | 4e-37 | 91 | 156 | 3 | 68 | Zinc finger protein JACKDAW |
5b3h_F | 4e-37 | 91 | 156 | 3 | 68 | Zinc finger protein JACKDAW |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022855799.1 | 7e-59 | protein indeterminate-domain 2-like | ||||
TrEMBL | A0A068U3D8 | 4e-56 | A0A068U3D8_COFCA; Uncharacterized protein | ||||
TrEMBL | A0A2G9G982 | 5e-56 | A0A2G9G982_9LAMI; Ovo transcription factor | ||||
TrEMBL | A0A438GID8 | 3e-56 | A0A438GID8_VITVI; Protein indeterminate-domain 1 | ||||
TrEMBL | F6GWY3 | 4e-56 | F6GWY3_VITVI; Uncharacterized protein | ||||
STRING | VIT_04s0023g01430.t01 | 6e-57 | (Vitis vinifera) |