PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6447_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 136aa MW: 15000.9 Da PI: 10.2995

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6447_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	19.6	2.4e-06	67	89	1	23
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++C++C+k F r nL+ H r H cra_locus_6447_iso_1_len_949_ver_3 67 FVCEICNKGFQRDQNLQLHRRGH 89 89*******************88 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF57667	1.32E-5	65	90	No hit	No description
Gene3D	G3DSA:3.30.160.60	2.8E-6	66	89	IPR013087	Zinc finger C2H2-type/integrase DNA-binding domain
Pfam	PF12171	1.4E-5	67	89	IPR022755	Zinc finger, double-stranded RNA binding
PROSITE profile	PS50157	10.949	67	89	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	69	89	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003676	Molecular Function	nucleic acid binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 136 aa Download sequence Send to blast
MPVDIDNSSA MNDSTASGEA SASSSGNQAA PPPKPAVKKK RNLPGMPDPD AEVIALSPKT 60 LLATNRFVCE ICNKGFQRDQ NLQLHRRGHN LPWKLRQRSS KDVKKRVYVC PEPTCVHHDP 120 SRALGDLTGR LIQRFX

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor promoting the transition to germination by regulating light and hormonal signaling during seed maturation (PubMed:21571950). Acts as a positive regulator of phytochrome and/or gibberellin action (PubMed:21571950, PubMed:25035403). {ECO:0000269\|PubMed:21571950, ECO:0000269\|PubMed:25035403}.
UniProt	Transcription factor that acts as a positive regulator of gibberellin (GA) action, homeostasis and signaling. GA converts the GAF1 complex from transcriptional activator to repressor via the degradation of DELLA proteins. {ECO:0000269\|PubMed:25035403}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_019154669.1	9e-79	PREDICTED: protein indeterminate-domain 2-like
Swissprot	Q9LVQ7	1e-67	IDD1_ARATH; Zinc finger protein ENHYDROUS
Swissprot	Q9SCQ6	7e-68	IDD2_ARATH; Zinc finger protein GAI-ASSOCIATED FACTOR 1
TrEMBL	A0A1U8FMZ6	9e-74	A0A1U8FMZ6_CAPAN; Protein indeterminate-domain 1
TrEMBL	A0A2G3AAD8	9e-74	A0A2G3AAD8_CAPAN; protein indeterminate-domain 1-like
TrEMBL	A0A314Y3D8	8e-74	A0A314Y3D8_PRUYE; Protein indeterminate-domain 2
TrEMBL	A0A4D6LRJ9	6e-75	A0A4D6LRJ9_VIGUN; Regulatory protein SWI5
STRING	EMJ05524	2e-74	(Prunus persica)

Publications ? help Back to Top
Fukazawa J, et al. DELLAs function as coactivators of GAI-ASSOCIATED FACTOR1 in regulation of gibberellin homeostasis and signaling in Arabidopsis. Plant Cell, 2014. 26(7): p. 2920-38 [PMID:25035403] Moreno-Risueno MA, et al. Transcriptional control of tissue formation throughout root development. Science, 2015. 350(6259): p. 426-30 [PMID:26494755] Khare D, et al. Root avoidance of toxic metals requires the GeBP-LIKE 4 transcription factor in Arabidopsis thaliana. New Phytol., 2017. 213(3): p. 1257-1273 [PMID:27768815]