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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6442_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Dof | ||||||||
Protein Properties | Length: 346aa MW: 36580.9 Da PI: 7.5284 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 123.2 | 8.8e-39 | 42 | 101 | 2 | 61 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkks 61 +++alkcprCds ntkfCyynny+lsqPr+fCk+CrryWtkGG lrnvPvGgg+rk k+s cra_locus_6442_iso_2_len_1653_ver_3 42 NQQALKCPRCDSLNTKFCYYNNYNLSQPRHFCKSCRRYWTKGGVLRNVPVGGGCRKTKRS 101 6899*****************************************************987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF02701 | 2.8E-33 | 44 | 100 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 4.0E-27 | 44 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 29.618 | 46 | 100 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 48 | 84 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 346 aa Download sequence Send to blast |
MQDIHAIGGG GGGGAVAGGG GRLFASGTGG GDRRLRPHHN QNQQALKCPR CDSLNTKFCY 60 YNNYNLSQPR HFCKSCRRYW TKGGVLRNVP VGGGCRKTKR SKPKPTVSSD AAAAASAAAP 120 SMEHNSNSHS SSESSSLTAT TTAAKNTATT AGGSSGEVAS ATVNSSNTST NLLSFQNSAR 180 FFASPQQFNA SSSFDQQQQQ LIDPSVSSNG QMFQEIGSFT SLMTSSNDPS LLGYNVADVS 240 TYRLQQNHHA VDDRSSNQMM GSTGEDDLKM EPINCGFLDQ TAQIGFSGLH QGRMNNGGLG 300 GLDWQMNGGG GGDQGLFDFT GTVDQTYWGQ NQWGDNDQSL NFPPLV |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00570 | DAP | Transfer from AT5G60850 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027126696.1 | 1e-138 | dof zinc finger protein DOF5.4-like | ||||
Refseq | XP_027167428.1 | 1e-138 | dof zinc finger protein DOF5.4-like | ||||
Refseq | XP_027167429.1 | 1e-138 | dof zinc finger protein DOF5.4-like | ||||
TrEMBL | A0A068TRH1 | 1e-135 | A0A068TRH1_COFCA; Uncharacterized protein | ||||
STRING | XP_009779672.1 | 5e-84 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA88 | 24 | 419 |