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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6393_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 167aa MW: 19092.4 Da PI: 10.6012 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13.7 | 0.00019 | 10 | 32 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C+++++++ +L H + H cra_locus_6393_iso_1_len_1011_ver_3 10 SCSVCSRVYPTSRLLSIHVSEvH 32 6*****************99877 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00355 | 2.1 | 9 | 32 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 11 | 32 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.42 | 47 | 72 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 49 | 72 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 167 aa Download sequence Send to blast |
XHYMARHSAS CSVCSRVYPT SRLLSIHVSE VHDSFFQAKV ARGFPMYECL VEGCGVKLKN 60 YKSRQQHLVD KHKFPTSFEF FKKAPPSKKQ RQKNQQKKSL ANTEEVSRTM QIDRDATNDL 120 VSAISKLSTS DTPSSISFGR RNTRGLTFVP RAVQRDRRPD SSDEMKT |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 87 | 93 | KKQRQKN |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006447049.1 | 2e-89 | zinc finger protein 511 | ||||
Refseq | XP_006470078.1 | 2e-89 | zinc finger protein 511 | ||||
TrEMBL | V4W2X6 | 5e-88 | V4W2X6_9ROSI; Uncharacterized protein | ||||
STRING | XP_006470078.1 | 8e-89 | (Citrus sinensis) | ||||
STRING | XP_006447049.1 | 8e-89 | (Citrus clementina) |