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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_63478_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | SBP | ||||||||
Protein Properties | Length: 154aa MW: 17458.2 Da PI: 8.5816 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 129.7 | 1e-40 | 77 | 152 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 C ve+C++d+++ k y+rrhkvC +h+ka+vvl++g+++rfCqqCsrfhelsefD++krsCr rLa+hnerrrk cra_locus_63478_iso_1_len_460_ver_3 77 CLVENCTTDMTDGKPYYRRHKVCAFHAKAAVVLLAGTQKRFCQQCSRFHELSEFDDAKRSCRMRLAGHNERRRK 150 ************************************************************************** PP -- CS SBP 76 kq 77 ++ cra_locus_63478_iso_1_len_460_ver_3 151 SS 152 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.3E-31 | 70 | 138 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.692 | 74 | 151 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 5.59E-36 | 76 | 152 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 2.8E-31 | 77 | 150 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 154 aa Download sequence Send to blast |
XSSDLGRGGS LVSPSFQLQF HWFHLCKGME TSTEGKTIVE VPLSDEETEE EENKNKRAMT 60 PCARKAYSAS GSSQISCLVE NCTTDMTDGK PYYRRHKVCA FHAKAAVVLL AGTQKRFCQQ 120 CSRFHELSEF DDAKRSCRMR LAGHNERRRK SSYX |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 8e-34 | 69 | 150 | 2 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcriptional factor. Binds to the promoter of the SQUAMOSA gene. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011096328.1 | 2e-50 | squamosa promoter-binding protein 1 | ||||
Swissprot | Q38741 | 1e-52 | SBP1_ANTMA; Squamosa promoter-binding protein 1 | ||||
TrEMBL | A0A2G9GQ12 | 6e-52 | A0A2G9GQ12_9LAMI; Squamosa promoter-binding-like protein | ||||
STRING | Migut.M01124.1.p | 2e-45 | (Erythranthe guttata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA749 | 24 | 105 |
Publications ? help Back to Top | |||
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