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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6334_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | NAC | ||||||||
Protein Properties | Length: 422aa MW: 47576.6 Da PI: 4.7076 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 81.9 | 1.4e-25 | 58 | 182 | 1 | 116 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskr 64 lp+G++F+P+d+e++++ L +kv+ ++ ++ e+i++vd i++++P++Lp vk++ + +fF+++ cra_locus_6334_iso_4_len_1736_ver_3 58 LPRGVKFDPSDQEIIWHLL-AKVRVRNlkphpfID--EFIPTVDeedgICYTHPQNLP-GVKQDGSVSHFFHRA 127 799************6655.555555534654322..33555544446**********.677888899****** PP NAM 65 dkkyatgkrknratk.....sgyWkatgkdkevlskkgelvglkktLvfykgrapkg 116 k+y+tg+rk+r+++ + +W++tg++k+vl +g++ g+kk++v+y a+ g cra_locus_6334_iso_4_len_1736_ver_3 128 IKAYNTGTRKRRKIHgdsfgDVRWHKTGRTKPVLL-DGTQEGCKKIMVLYVSPAK-G 182 ************86555555788************.999***********43333.3 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.09E-28 | 43 | 216 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 22.585 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 2.2E-7 | 59 | 181 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 422 aa Download sequence Send to blast |
MARPSWLVDS NRIATKIKSA SGASDPQEIN WKSNPTKACP NCQYAIDNSD TTQEWPGLPR 60 GVKFDPSDQE IIWHLLAKVR VRNLKPHPFI DEFIPTVDEE DGICYTHPQN LPGVKQDGSV 120 SHFFHRAIKA YNTGTRKRRK IHGDSFGDVR WHKTGRTKPV LLDGTQEGCK KIMVLYVSPA 180 KGGKAEKXQL GDAPISPGNT GGEREGEYVI SKVFYQQPQL KLSEKNELEL LEDVDAMIVK 240 ADPVTPKLVT PEPPSTGKRL LGSDAGEVPI DPSTQHCEEE YMEDYVEAPT EQLGCEDHIS 300 MEHQNSQKEE KNENDEEPKW WDGESQYLLD SQQLVEGLSL CDELLQSQSP NRDGNRTDQE 360 LKNKPRLSDY AQLGTESWKK DLEECQNLVL DPPNMDHDAA DFRLSQIEFG SQDSYISWGA 420 NK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027153685.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-162 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A068TYZ2 | 0.0 | A0A068TYZ2_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400002122 | 0.0 | (Solanum tuberosum) |