![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_6334_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 375aa MW: 42836.5 Da PI: 6.1017 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105 | 9.6e-33 | 58 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskr 64 lp+G++F+P+d+e++++ L +kv+ ++ ++ e+i++vd i++++P++Lp vk++ + +fF+++ cra_locus_6334_iso_1_len_1596_ver_3 58 LPRGVKFDPSDQEIIWHLL-AKVRVRNlkphpfID--EFIPTVDeedgICYTHPQNLP-GVKQDGSVSHFFHRA 127 799************6655.555555534654322..33555544446**********.677888899****** PP NAM 65 dkkyatgkrknratk.....sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 k+y+tg+rk+r+++ + +W++tg++k+vl +g++ g+kk++v+y ++ k+ekt+Wvmh+y+l cra_locus_6334_iso_1_len_1596_ver_3 128 IKAYNTGTRKRRKIHgdsfgDVRWHKTGRTKPVLL-DGTQEGCKKIMVLYvsPAKGGKAEKTSWVMHQYHL 197 ************86555555788************.999***********5534666778*********98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 1.31E-35 | 43 | 203 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 27.14 | 58 | 216 | IPR003441 | NAC domain |
Pfam | PF02365 | 9.3E-14 | 59 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0000077 | Biological Process | DNA damage checkpoint | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0010332 | Biological Process | response to gamma radiation | ||||
GO:0040020 | Biological Process | regulation of meiotic nuclear division | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 375 aa Download sequence Send to blast |
MARPSWLVDS NRIATKIKSA SGASDPQEIN WKSNPTKACP NCQYAIDNSD TTQEWPGLPR 60 GVKFDPSDQE IIWHLLAKVR VRNLKPHPFI DEFIPTVDEE DGICYTHPQN LPGVKQDGSV 120 SHFFHRAIKA YNTGTRKRRK IHGDSFGDVR WHKTGRTKPV LLDGTQEGCK KIMVLYVSPA 180 KGGKAEKTSW VMHQYHLGTQ EEKGKANMLS PKCFTSSRSS SXVRKMNLNF LEKYMEDYVE 240 APTEQLGCED HISMEHQNSQ KEEKNENDEE PKWWDGESQY LLDSQQLVEG LSLCDELLQS 300 QSPNRDGNRT DQELKNKPRL SDYAQLGTES WKKDLEECQN LVLDPPNMDH DAADFRLSQI 360 EFGSQDSYIS WGANK |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027153685.1 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X2 | ||||
Swissprot | Q6NQK2 | 1e-112 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | A0A068TYZ2 | 0.0 | A0A068TYZ2_COFCA; Uncharacterized protein | ||||
STRING | XP_009614314.1 | 1e-180 | (Nicotiana tomentosiformis) |