PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6296_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 1251aa MW: 136609 Da PI: 4.9209

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6296_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	12.3	0.00052	416	438	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C++C+ F+++++L +H+ + H cra_locus_6296_iso_3_len_4201_ver_3 416 HCEKCNSNFNSRDDLLQHQLSsH 438 5******************9988 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:3.30.890.10	4.9E-4	277	335	IPR001739	Methyl-CpG DNA binding
PROSITE profile	PS50982	9.775	281	353	IPR001739	Methyl-CpG DNA binding
SuperFamily	SSF54171	7.19E-7	287	335	IPR016177	DNA-binding domain
Pfam	PF01429	5.4E-5	289	333	IPR001739	Methyl-CpG DNA binding
PROSITE profile	PS50157	11.448	415	443	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.036	415	438	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	417	438	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.265	460	487	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.34	460	482	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	462	482	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 1251 aa Download sequence Send to blast
MASATVESVT ATTGSAPSDI PLRLDSIPTV DLQLLSQSEL YSLSLCSPSI FDPRRCDDVV 60 IPKIDRSVFN ESAGSRKQTY YRLRLARSSD AASASSSIRC RTPHLRPASH NPHPHFLETD 120 PENAENRQIL ALLKQLFGVD SSISVKDDSM EELVPVRVDF SDTMPQLANV VSTGQKRKRG 180 RPRKNENAAI LVENKLESQC VNDVPLATNQ ILVYENVEDK DKDIVNRDGI EVDLIQLGSM 240 EDPYEEELWR KTEGMGTEEQ LLEFLKGLNG QWASRRKKKR IVDASLFGNA LPKGWRLLLS 300 CKRKDGRVWL FCRRYISPNG RQFVSCKEIS AYLLSLRGIP DANQQICVQS NAGATATDKM 360 TTAITADASL PNEKREEKPL CQTMSPAVTS ASGNYDVQIT MMPGDPPAVQ VGENLHCEKC 420 NSNFNSRDDL LQHQLSSHRR RRPKNGESVT DGVIIRGGKY ECQFCHKTFD ERHRYNGHVG 480 SHMRNQVRNS AESRAAHVEE FLGTGSSDPL PHGNTIVQPA IGLESNVAAQ NVRSGSDDPP 540 NPCTDEQNGD SRDLNDYLGT VDNSMDVDVT KSKICFDSVT VLSNNENSNY CEASSGANVI 600 KNAVDGIEKS CNAQERSSDA CSPFSLDKPV DSDTNAITFV EPKISGSVSR SSNEQMESCD 660 IDLDGGDFSR TMGEFKLEEN KVVDDGTLFG LCDRNGGVND SGAIGYKQHD QSPSDIGEAN 720 GKSISTAAGS EQKIFSAGTM LAPSSDGKED GDRDRFGAFP GSTLEGGEHN QTGLCGSKGH 780 QSDKHAQEER GIGSSRIVPT WNETGNGTGM FNKEVSVGII EGHQQPKSSE SNLPSLSGFN 840 GSYGVEDYFN KVSTREVQQP KVNDVHNMRN NELVFSFSTG SGEIGTDATN KNKHEGGFEF 900 RAFFPPENGK VFSAENNGMS VQNHAGEESK KEPSGSVLLA QPRLAESSGE VYNVNKIFGT 960 QVDEHRSNII GNSKSHELCL AFSNQADSSG VELEKYGAKS FDIHSGINQS YGTQNNLNMG 1020 NVAPKEGRAF GIDLHGFSDK TSVFENNFNM VYPGRVWEEP KVDDGGNSGN KFMVGFGNSV 1080 PQPVEDVLAG SIWRTGEENL LRSDLTDPST PLIQSSNGFH TFDIISDKGH EGLFGVDHKY 1140 DCNSGFEGLT LGRSEPMEYS FMTAQSSNTL PGDSKGFSYN TDTQQGFDSP FWLGKDSLMQ 1200 NMTGRNQVPT VCVWCRNEFY QDPATSGSQT GAIGSICPAC NSKISQQFNV L

Sequence ? help Back to Top

Protein Sequence Length: 1251 aa Download sequence Send to blast

MASATVESVT ATTGSAPSDI PLRLDSIPTV DLQLLSQSEL YSLSLCSPSI FDPRRCDDVV  60
IPKIDRSVFN ESAGSRKQTY YRLRLARSSD AASASSSIRC RTPHLRPASH NPHPHFLETD  120
PENAENRQIL ALLKQLFGVD SSISVKDDSM EELVPVRVDF SDTMPQLANV VSTGQKRKRG  180
RPRKNENAAI LVENKLESQC VNDVPLATNQ ILVYENVEDK DKDIVNRDGI EVDLIQLGSM  240
EDPYEEELWR KTEGMGTEEQ LLEFLKGLNG QWASRRKKKR IVDASLFGNA LPKGWRLLLS  300
CKRKDGRVWL FCRRYISPNG RQFVSCKEIS AYLLSLRGIP DANQQICVQS NAGATATDKM  360
TTAITADASL PNEKREEKPL CQTMSPAVTS ASGNYDVQIT MMPGDPPAVQ VGENLHCEKC  420
NSNFNSRDDL LQHQLSSHRR RRPKNGESVT DGVIIRGGKY ECQFCHKTFD ERHRYNGHVG  480
SHMRNQVRNS AESRAAHVEE FLGTGSSDPL PHGNTIVQPA IGLESNVAAQ NVRSGSDDPP  540
NPCTDEQNGD SRDLNDYLGT VDNSMDVDVT KSKICFDSVT VLSNNENSNY CEASSGANVI  600
KNAVDGIEKS CNAQERSSDA CSPFSLDKPV DSDTNAITFV EPKISGSVSR SSNEQMESCD  660
IDLDGGDFSR TMGEFKLEEN KVVDDGTLFG LCDRNGGVND SGAIGYKQHD QSPSDIGEAN  720
GKSISTAAGS EQKIFSAGTM LAPSSDGKED GDRDRFGAFP GSTLEGGEHN QTGLCGSKGH  780
QSDKHAQEER GIGSSRIVPT WNETGNGTGM FNKEVSVGII EGHQQPKSSE SNLPSLSGFN  840
GSYGVEDYFN KVSTREVQQP KVNDVHNMRN NELVFSFSTG SGEIGTDATN KNKHEGGFEF  900
RAFFPPENGK VFSAENNGMS VQNHAGEESK KEPSGSVLLA QPRLAESSGE VYNVNKIFGT  960
QVDEHRSNII GNSKSHELCL AFSNQADSSG VELEKYGAKS FDIHSGINQS YGTQNNLNMG  1020
NVAPKEGRAF GIDLHGFSDK TSVFENNFNM VYPGRVWEEP KVDDGGNSGN KFMVGFGNSV  1080
PQPVEDVLAG SIWRTGEENL LRSDLTDPST PLIQSSNGFH TFDIISDKGH EGLFGVDHKY  1140
DCNSGFEGLT LGRSEPMEYS FMTAQSSNTL PGDSKGFSYN TDTQQGFDSP FWLGKDSLMQ  1200
NMTGRNQVPT VCVWCRNEFY QDPATSGSQT GAIGSICPAC NSKISQQFNV L

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	274	279	RRKKKR

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027093346.1	0.0	uncharacterized protein LOC113713762
Refseq	XP_027148869.1	0.0	uncharacterized protein LOC113749366
TrEMBL	A0A068TXS5	0.0	A0A068TXS5_COFCA; Uncharacterized protein

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7850	16	19