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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_62259_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Dof | ||||||||
Protein Properties | Length: 186aa MW: 20936.7 Da PI: 8.4825 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 113.3 | 1e-35 | 2 | 54 | 10 | 62 |
zf-Dof 10 rCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 rC+stntkfCyynnyslsqPryfCk+CrryWt+GG+lrnvPvGgg+rkn+k+s cra_locus_62259_iso_2_len_555_ver_3 2 RCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTAGGSLRNVPVGGGSRKNNKRS 54 9************************************************9987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50884 | 27.028 | 1 | 52 | IPR003851 | Zinc finger, Dof-type |
ProDom | PD007478 | 3.0E-20 | 2 | 46 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 1.2E-29 | 2 | 52 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 186 aa Download sequence Send to blast |
XRCNSTNTKF CYYNNYSLSQ PRYFCKTCRR YWTAGGSLRN VPVGGGSRKN NKRSSSSINS 60 NPNSSSKKIC LPDPKIHHPH DLNLAYNPPD FINGQISQFF AFDPTNPNID LTTTTSTSSA 120 MELFKTAGNI MASDHFNPLN DHQFKPSLGF SLDGLEINGL QDHPSRIIFP FEDLKNSSIN 180 EFDHQX |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_011075948.1 | 1e-51 | dof zinc finger protein DOF4.6-like | ||||
TrEMBL | A0A1Q3CRH4 | 8e-50 | A0A1Q3CRH4_CEPFO; Zf-Dof domain-containing protein | ||||
STRING | XP_007136465.1 | 9e-49 | (Phaseolus vulgaris) |