 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
cra_locus_6180_iso_5 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 256aa MW: 29053.1 Da PI: 9.5674 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_6180_iso_5 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 91.2 | 5.1e-29 | 9 | 59 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krienk+ rqvtfskRr g+lKKA+E+SvLCda+va+i+fs++gkl+eyss
cra_locus_6180_iso_5_len_1040_ver_3 9 KRIENKISRQVTFSKRRCGLLKKAHEISVLCDADVALIVFSTKGKLFEYSS 59
79***********************************************96 PP
|
| 2 | K-box | 100.3 | 2.8e-33 | 87 | 177 | 10 | 100 |
K-box 10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkk 83
+++ + +++ ++ kL ++ie Lqr++Rh++GedL++L+l+eLq+LeqqL++slk+iR++Kn+l+ e+++elqkk
cra_locus_6180_iso_5_len_1040_ver_3 87 QSEPQDNWSVQYPKLVSKIELLQRNIRHYMGEDLDPLNLRELQSLEQQLDTSLKRIRTRKNQLMQESVSELQKK 160
4556789******************************************************************* PP
K-box 84 ekelqeenkaLrkklee 100
ek+lqe+n++L kkl+e
cra_locus_6180_iso_5_len_1040_ver_3 161 EKALQEQNNSLAKKLKE 177
**************986 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 1.2E-38 | 1 | 60 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 31.749 | 1 | 61 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 1.46E-41 | 2 | 77 | No hit | No description |
| SuperFamily | SSF55455 | 3.79E-32 | 2 | 83 | IPR002100 | Transcription factor, MADS-box |
| PROSITE pattern | PS00350 | 0 | 3 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-30 | 3 | 23 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 1.3E-24 | 10 | 57 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-30 | 23 | 38 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 4.5E-30 | 38 | 59 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF01486 | 3.2E-28 | 88 | 175 | IPR002487 | Transcription factor, K-box |
| PROSITE profile | PS51297 | 17.11 | 91 | 181 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 256 aa
Download sequence Send
to blast |
MGRGRVELKR IENKISRQVT FSKRRCGLLK KAHEISVLCD ADVALIVFST KGKLFEYSST 60
DSSMESILER YERYSHAEKR LTALHDQSEP QDNWSVQYPK LVSKIELLQR NIRHYMGEDL 120
DPLNLRELQS LEQQLDTSLK RIRTRKNQLM QESVSELQKK EKALQEQNNS LAKKLKESEK 180
VDSDQQTQLV QRRLVQSSTA MLLPDPPPHS SLQLPSLTIG GPFLATGGGM DEGGGGAQDR 240
HGSKSLVPPW LLPHIN
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor involved in flower development. {ECO:0000250|UniProtKB:Q0HA25}. |
