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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6172_iso_2 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Dof | ||||||||
Protein Properties | Length: 504aa MW: 54143.8 Da PI: 5.2361 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 126.2 | 1e-39 | 139 | 199 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s cra_locus_6172_iso_2_len_2208_ver_3 139 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKNCQRYWTAGGTMRNVPVGAGRRKNKNSA 199 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 4.0E-30 | 137 | 196 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 4.0E-32 | 141 | 197 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.975 | 143 | 197 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 145 | 181 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 504 aa Download sequence Send to blast |
MSEGKDPAIK LFGMTIQLPD NPVAAPSQSS ECGGEGSPQS PPSEDPPASP NPLSEEDASL 60 SSGRAEQHSG EELQEVTGDD GKAEDGAGPM MSEESDPNLV KENPGAESVD NVAAPAQASK 120 NEEDQNETGN AQDKTPKKPD KILPCPRCNS MDTKFCYYNN YNVNQPRHFC KNCQRYWTAG 180 GTMRNVPVGA GRRKNKNSAS QYRQITVSET LQTSRPDLPN GIHYPALKPN GTVLTFGSDA 240 PLCESMASVL NIAEKTARNG FHRPEELRIP NPYGTGGNGD EQSSASAVTV SSSKDEASKD 300 GSPDKLMPPN CHGIPPQLSC FPGPPWPYPW NSVQWSPSVP PAVFCPATFP MHFYAAPPYW 360 GCTVPGAWNV PWLNPPNTSQ SHTPPTSGPN SPTLGKHSRD DNTLKSINSE KEESQKESNA 420 EKCLWFPKTL RIDDPGEAAR SSIWATLGIK NVKLNSTCGG GGLFKPFQSK GSEKEKTINV 480 SETSSVLQAN PAALSRSVSF RESS |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00046 | PBM | Transfer from AT5G39660 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027074815.1 | 0.0 | cyclic dof factor 2-like isoform X2 | ||||
Refseq | XP_027150675.1 | 0.0 | cyclic dof factor 2-like isoform X2 | ||||
TrEMBL | A0A068U1T1 | 0.0 | A0A068U1T1_COFCA; Uncharacterized protein | ||||
STRING | VIT_14s0108g00980.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA532 | 24 | 122 |