 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
cra_locus_61247_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
LSD |
| Protein Properties |
Length: 170aa MW: 17890.6 Da PI: 9.8418 |
| Description |
LSD family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_61247_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-LSD1 | 47 | 4.2e-15 | 6 | 30 | 1 | 25 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdtV 25
CggCrtlL+ PrGA+sVRC++C+tV
cra_locus_61247_iso_1_len_721_ver_3 6 CGGCRTLLMHPRGATSVRCSCCHTV 30
************************9 PP
|
| 2 | zf-LSD1 | 39.2 | 1.2e-12 | 44 | 67 | 1 | 24 |
zf-LSD1 1 CggCrtlLsYPrGApsVRCalCdt 24
Cg+Cr +L+YP GApsV+Ca+C+
cra_locus_61247_iso_1_len_721_ver_3 44 CGNCRMMLMYPCGAPSVKCAVCHY 67
**********************96 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 170 aa
Download sequence Send
to blast |
MAQLICGGCR TLLMHPRGAT SVRCSCCHTV NLVPGPNQFA HVYCGNCRMM LMYPCGAPSV 60
KCAVCHYITN VNAGDGRTHV PVNTPNGTAT PASGSSSTAK ARSQNQTVVV QNPMSVDESG 120
KLVNNVVVGV TTTSSLSVKL VHGRRLRVFP ASIGKMSIKM AAAYKYGSVX
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Putative zinc finger that may be involved in programmed cell death and defense response. {ECO:0000250}. |
