PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_6071_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 410aa MW: 46865.4 Da PI: 4.9751

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_6071_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	96.5	2.4e-30	231	315	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgklkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkrtse 74 rW+k ev aL+++r++++ +++++ lk+plWeevs +m++ g+ r++k+Ckekwen+nk+y+++ke++k+r +e cra_locus_6071_iso_3_len_1900_ver_3 231 RWPKAEVEALVRLRTNLGMQFQDNGLKGPLWEEVSLAMKKLGYDRNAKRCKEKWENINKYYRRVKESQKRR-PE 303 8*******************************************************************97.9 PP trihelix 75 ssstcpyfdqle 86 ss+tcpyf+ l+ cra_locus_6071_iso_3_len_1900_ver_3 304 SSKTCPYFHLLD 315 *********987 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
CDD	cd12203	8.99E-24	230	295	No hit	No description
Pfam	PF13837	6.7E-22	230	317	No hit	No description
PROSITE profile	PS50090	7.422	230	288	IPR017877	Myb-like domain

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MFDNQPSLPS PALNQIQSYA VETTSATEPM VIKPTSVSLD FVASRPTQSL NMDALTPSTS 60 TTSSSGRDSE GSIKKKRKLV DYFEKLMREV LEKQENLQNQ LLNALEKCER ERMAREEAWK 120 KQQMDRIRKE QEILAHERAI AAAKDAAVMA FLQKISEQTI PMQFPETPVP VTGKHAGTDQ 180 VKTPSPLPEN IDKRDTVVEN NINKSDSVIE KAIEQQENGA NENFSQSSAS RWPKAEVEAL 240 VRLRTNLGMQ FQDNGLKGPL WEEVSLAMKK LGYDRNAKRC KEKWENINKY YRRVKESQKR 300 RPESSKTCPY FHLLDSLYER KSNRVEQNPD WSGANLKPED ILMQMMNRQQ QQHQQPQQPQ 360 SLIEDGLREN MDQNREDEAE EDDEEEDDEN GNGYELVANK PSSVASMGVS

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MFDNQPSLPS PALNQIQSYA VETTSATEPM VIKPTSVSLD FVASRPTQSL NMDALTPSTS  60
TTSSSGRDSE GSIKKKRKLV DYFEKLMREV LEKQENLQNQ LLNALEKCER ERMAREEAWK  120
KQQMDRIRKE QEILAHERAI AAAKDAAVMA FLQKISEQTI PMQFPETPVP VTGKHAGTDQ  180
VKTPSPLPEN IDKRDTVVEN NINKSDSVIE KAIEQQENGA NENFSQSSAS RWPKAEVEAL  240
VRLRTNLGMQ FQDNGLKGPL WEEVSLAMKK LGYDRNAKRC KEKWENINKY YRRVKESQKR  300
RPESSKTCPY FHLLDSLYER KSNRVEQNPD WSGANLKPED ILMQMMNRQQ QQHQQPQQPQ  360
SLIEDGLREN MDQNREDEAE EDDEEEDDEN GNGYELVANK PSSVASMGVS

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	73	78	KKKRKL

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00244	DAP	Transfer from AT1G76890	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027075443.1	1e-160	trihelix transcription factor GT-2-like
Refseq	XP_027179992.1	1e-160	trihelix transcription factor GT-2-like
TrEMBL	A0A068UW86	1e-158	A0A068UW86_COFCA; Uncharacterized protein
STRING	cassava4.1_006275m	1e-112	(Manihot esculenta)