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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_6055_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | Dof | ||||||||
Protein Properties | Length: 503aa MW: 54523.6 Da PI: 6.084 | ||||||||
Description | Dof family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-Dof | 125.6 | 1.5e-39 | 145 | 205 | 2 | 62 |
zf-Dof 2 kekalkcprCdstntkfCyynnyslsqPryfCkaCrryWtkGGalrnvPvGggrrknkkss 62 ++k+l+cprC+s++tkfCyynny+++qPr+fCk+C+ryWt+GG++rnvPvG+grrknk+s cra_locus_6055_iso_4_len_1948_ver_3 145 PDKILPCPRCNSMDTKFCYYNNYNVNQPRHFCKSCQRYWTAGGTMRNVPVGAGRRKNKNSA 205 7899******************************************************976 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
ProDom | PD007478 | 6.0E-30 | 143 | 202 | IPR003851 | Zinc finger, Dof-type |
Pfam | PF02701 | 3.1E-32 | 147 | 203 | IPR003851 | Zinc finger, Dof-type |
PROSITE profile | PS50884 | 28.919 | 149 | 203 | IPR003851 | Zinc finger, Dof-type |
PROSITE pattern | PS01361 | 0 | 151 | 187 | IPR003851 | Zinc finger, Dof-type |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 503 aa Download sequence Send to blast |
MKEVKDPEIR LFGKKIALPE NGRILPVITA EDGNGGRSKE NSIGSDSDCS LDGKKVIRAE 60 VNEDIEDEKD EADKVXLAGD CETKPEEKDE HSISEETENS KPLSASDDSP DALPMDEDSP 120 TKESGNAESE NEQNDGTNSQ QKKKPDKILP CPRCNSMDTK FCYYNNYNVN QPRHFCKSCQ 180 RYWTAGGTMR NVPVGAGRRK NKNSASHCRH ITISEALQAA RIDAPNGFHH PTLKPNGTVL 240 SFGPDIPLCD SMASVLNLAE KKLPNGDRNG FYKVDPVISV SYKGTENGDD CSSGSSVTTS 300 NSMVENGKKG QQEPVIQHIN GFHSPVPCLP GVPWPFPWNS GVPLPAICPT AFPMPFYPAP 360 FPWNCNVASV PGAWSIPWMP PVSPTASQKP SGSSPNSPLG KHSRDGELLN KPNSTKANES 420 PEKKNSESSI LVPKTLRIDD PDEAAKSSIW TTLGIKYDSI SRGGLFKALQ PKGDQKKPLP 480 ATSPVLQANP AALSRSVTFQ ETA |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00394 | DAP | Transfer from AT3G47500 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027167719.1 | 0.0 | cyclic dof factor 3 | ||||
TrEMBL | A0A068UVL6 | 0.0 | A0A068UVL6_COFCA; Uncharacterized protein | ||||
STRING | Solyc03g115940.2.1 | 0.0 | (Solanum lycopersicum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA532 | 24 | 122 |