PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5935_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family C3H
Protein Properties Length: 342aa    MW: 37932.6 Da    PI: 6.747
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5935_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH45.31.4e-14258283126
                                          --S---SGGGGTS--TTTTT-SS-SS CS
                              zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                                          +ktelC+ +++tG C+yG+ C+FaHg
  cra_locus_5935_iso_1_len_1279_ver_3 258 FKTELCNKWQETGACPYGEHCQFAHG 283
                                          79***********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.105.5E-19252290IPR000571Zinc finger, CCCH-type
SuperFamilySSF902295.23E-11254289IPR000571Zinc finger, CCCH-type
SMARTSM003561.0E-8257284IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.042257285IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-11258283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.66E-8291325IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.2E-11291323IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.047295323IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-4295322IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 342 aa     Download sequence    Send to blast
MEKEISTTGH GDTSGAADDM NYRSFFGSSL SPFLNYLNDG QDITTYQPLE LKRSMMAPRL  60
PPSELLMDLH HHQDLIDRHN AVLGHLKETA KQAQALRQEN INLKMVNADL TSRLSLLLRA  120
SSDYAASFGF TGMDPGANLD DVLRDLGMMS LGGGMSEGQS WDDLTTEGDS PSPTSVIDSG  180
RVEGNGDTGD RVSLPKSISV RSSGYLKQQV PAGGSSGGRV NKVLHPSKTC NTAQKVYVKG  240
GKKEEEPLEL EVYNQGMFKT ELCNKWQETG ACPYGEHCQF AHGIEELRPV LRHPRYKTEV  300
CRMVLSGDHC PYGHRCHFRH TLTDQEKLIK SMNLRSFKDL NR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1rgo_A3e-23258320466Butyrate response factor 2
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027154214.11e-147zinc finger CCCH domain-containing protein 15-like
SwissprotQ9C9F56e-69C3H15_ARATH; Zinc finger CCCH domain-containing protein 15
TrEMBLA0A068TWU91e-145A0A068TWU9_COFCA; Uncharacterized protein
STRINGXP_009774204.11e-107(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA91402228