PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5900_iso_5
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family HSF
Protein Properties Length: 515aa    MW: 56726.1 Da    PI: 6.1094
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5900_iso_5genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind115.63.2e-36291212103
                                          HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTX CS
                         HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekksksk 75 
                                          Fl+k+y++++d+++++++sws+++nsfvv++  efa+++LpkyFkh+nf+SFvRQLn+YgF+kv+ ++      
  cra_locus_5900_iso_5_len_1801_ver_3  29 FLSKTYDMVDDPATDSVVSWSKTNNSFVVWNVPEFARDLLPKYFKHNNFSSFVRQLNTYGFRKVDPDR------ 96 
                                          9****************************************************************999...... PP

                                          TTSEEEEESXXXXXXXXXXXXXXXXXXX CS
                         HSF_DNA-bind  76 ekiweFkhksFkkgkkellekikrkkse 103
                                             weF+++ F +g+k+ll++i r+ks+
  cra_locus_5900_iso_5_len_1801_ver_3  97 ---WEFANEGFLRGHKHLLKTISRRKST 121
                                          ...**********************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.103.1E-3919113IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467854.62E-3525118IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004158.5E-6225118IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004471.3E-3129118IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-202952IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-206779IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406892IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000562.8E-208092IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0006886Biological Processintracellular protein transport
GO:0016192Biological Processvesicle-mediated transport
GO:0005634Cellular Componentnucleus
GO:0016020Cellular Componentmembrane
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005484Molecular FunctionSNAP receptor activity
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 515 aa     Download sequence    Send to blast
XGEASRARTA TRANSSSSSS QAPPPPTPFL SKTYDMVDDP ATDSVVSWSK TNNSFVVWNV  60
PEFARDLLPK YFKHNNFSSF VRQLNTYGFR KVDPDRWEFA NEGFLRGHKH LLKTISRRKS  120
THVQGQQQPT QVQNTSTGSC VEVGKFGLDE EVERLKRDKN VLMQELVRLR QQQQATDQQL  180
QTVGQRVHLM EQRQQQMMSF LAKAMQSPGF MAQLVHPQND SNRRISGINK KRRLPNQDEE  240
NLAGNHGATL PDGQIVKFQP QMNEAAKAVF RQILKINASS RLEQKINHAN GYLIDGAHTS  300
ANALESSSAS SRISGVTLSE VLPSVQPHVA SDPVLKFDQP SSVVSTGQSS PSIKSGEAKV  360
SNIPLEVNIL SPQEKLISMD LYKGNGIIPE ISSDLPNIGL KGSEGGETGY VHTIPEFVDG  420
GLPVMPDGFS SDPDGDILLD EIPKLPSIND SFWEQFLSQG SLSGEVADES SSSLEENVSV  480
EQNLQMGTNS EWDRLNHMNN LTEQMGLLVS GSKPG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B6e-252911829129Heat shock factor protein 1
5d5v_B6e-252911829129Heat shock factor protein 1
5d5v_D6e-252911829129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000250}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Not induced by heat stress. {ECO:0000269|PubMed:18064488}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016564126.10.0PREDICTED: heat stress transcription factor A-1 isoform X1
SwissprotQ84T611e-152HSFA1_ORYSJ; Heat stress transcription factor A-1
TrEMBLA0A2G9I1940.0A0A2G9I194_9LAMI; Heat shock transcription factor
STRINGXP_009623591.10.0(Nicotiana tomentosiformis)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA50542137
Publications ? help Back to Top
  1. Chauhan H,Khurana N,Agarwal P,Khurana P
    Heat shock factors in rice (Oryza sativa L.): genome-wide expression analysis during reproductive development and abiotic stress.
    Mol. Genet. Genomics, 2011. 286(2): p. 171-87
    [PMID:21792744]