PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5882_iso_3
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family ARR-B
Protein Properties Length: 607aa    MW: 68845.2 Da    PI: 6.0791
Description ARR-B family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5882_iso_3genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1G2-like25.72.5e-08200222123
                              G2-like   1 kprlrWtpeLHerFveaveqLGG 23 
                                          k+r++Wt +LH++Fv+av+q+G 
  cra_locus_5882_iso_3_len_2651_ver_3 200 KTRVVWTVDLHQKFVKAVNQIGF 222
                                          68*******************74 PP
2G2-like37.74.6e-122492782655
                              G2-like  26 kAtPktilelmkvkgLtlehvkSHLQkYRl 55 
                                          k  Pk+il+lm+v+ Lt+e+v+SHLQkYRl
  cra_locus_5882_iso_3_len_2651_ver_3 249 KVGPKKILDLMGVPWLTRENVASHLQKYRL 278
                                          667**************************8 PP
3Response_reg82.31.6e-27201281109
                                          EEEESSSHHHHHHHHHHHHHTTCEEEEEESSHHHHHHHHHHHH..ESEEEEESSCTTSEHHHHHHHHHHHTTTS CS
                         Response_reg   1 vlivdDeplvrellrqalekegyeevaeaddgeealellkekd..pDlillDiempgmdGlellkeireeepkl 72 
                                          vl+vdD+p+ +++l+++l+k  y ev+++  ++eal+ll+e++  +D+++ D++mp+mdG++ll++   e  +l
  cra_locus_5882_iso_3_len_2651_ver_3  20 VLVVDDDPTWLKILEKMLKKCSY-EVTTCGLAREALDLLRERKdgFDIVISDVNMPDMDGFKLLEHVGLEM-DL 91 
                                          89*********************.***************999999**********************6644.8* PP

                                          EEEEEESTTTHHHHHHHHHTTESEEEESS--HHHHHH CS
                         Response_reg  73 piivvtahgeeedalealkaGakdflsKpfdpeelvk 109
                                          p+i+++  ge + + + ++ Ga d+l Kp+ ++el++
  cra_locus_5882_iso_3_len_2651_ver_3  92 PVIMMSVDGETSRVMKGVQHGACDYLLKPIRMKELRN 128
                                          **********************************987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF521721.85E-3617151IPR011006CheY-like superfamily
Gene3DG3DSA:3.40.50.23001.1E-4417147No hitNo description
SMARTSM004481.3E-3218130IPR001789Signal transduction response regulator, receiver domain
PROSITE profilePS5011043.77319134IPR001789Signal transduction response regulator, receiver domain
PfamPF000721.5E-2420129IPR001789Signal transduction response regulator, receiver domain
CDDcd001569.16E-3121134No hitNo description
SuperFamilySSF466895.55E-13198282IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.601.0E-24199283IPR009057Homeodomain-like
PfamPF002491.9E-5202277IPR001005SANT/Myb domain
TIGRFAMsTIGR015571.7E-10248278IPR006447Myb domain, plants
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0000160Biological Processphosphorelay signal transduction system
GO:0009735Biological Processresponse to cytokinin
GO:0010082Biological Processregulation of root meristem growth
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 607 aa     Download sequence    Send to blast
MEVSGYPSPR TDAFPAGLRV LVVDDDPTWL KILEKMLKKC SYEVTTCGLA REALDLLRER  60
KDGFDIVISD VNMPDMDGFK LLEHVGLEMD LPVIMMSVDG ETSRVMKGVQ HGACDYLLKP  120
IRMKELRNIW QHVFRKRIHE VKEIENHEGF EEIQFMRNVC DQSEDRMFSS ANDLASGKKR  180
KDYENKHDDR ECSDSSSVKK TRVVWTVDLH QKFVKAVNQI GFESKSLILA FSYYWAPISF  240
HNLVLFPAKV GPKKILDLMG VPWLTRENVA SHLQKYRLYL TRLQKEKELT ASFGVMKHSD  300
ISSKEQTGNH CLQNSVNMQQ TNGSCGISGN KTAMQNIDFE IHEGDLKSLV KIPMVDANNG  360
LGGDNPDSQR GRRMNADHSF RKLDSDVKYA TTIPEQYMWS AEGSEVQANQ ERKQPFRPKP  420
GFNPMPLPSL HQNIQFDCVR PTPSFVSKPS NIHNDKLGGS EKKTIFVKSV SHGNMVDLLP  480
VQPQSELTAT TSQEVLKPDP SSIVWSTKNQ RAADQIFVSD MESAQRSIDL VGGWGLATWE  540
ENQQGCLIEA DIHRLTQGLQ NIESFSYNEA GIISEASSYL YDSLKFDYEM PLEPMEYSVI  600
DQGLFIV
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00010PBMTransfer from AT1G67710Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_027100212.10.0two-component response regulator ORR26 isoform X1
RefseqXP_027152868.10.0two-component response regulator ORR26
TrEMBLA0A2R6RED20.0A0A2R6RED2_ACTCH; Two-component response regulator like
STRINGEMJ281550.0(Prunus persica)