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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5831_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 405aa MW: 46154 Da PI: 5.833 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 40.5 | 6.2e-13 | 109 | 150 | 4 | 46 |
S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqk 46 W ++E+ ll+++++++G g+W+ +a+++g +++ qc++++++ cra_locus_5831_iso_7_len_1728_ver_3 109 WNADEEILLLEGIEMYGLGNWAEVAEHVG-TKSKSQCIDHYNT 150 *****************************.***********97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PIRSF | PIRSF025024 | 2.8E-123 | 36 | 405 | IPR016827 | Transcriptional adaptor 2 |
SMART | SM00291 | 1.3E-9 | 45 | 90 | IPR000433 | Zinc finger, ZZ-type |
Pfam | PF00569 | 5.6E-10 | 47 | 90 | IPR000433 | Zinc finger, ZZ-type |
PROSITE profile | PS50135 | 10.914 | 49 | 92 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF57850 | 8.0E-14 | 49 | 112 | No hit | No description |
CDD | cd02335 | 1.09E-24 | 49 | 97 | No hit | No description |
PROSITE pattern | PS01357 | 0 | 51 | 78 | IPR000433 | Zinc finger, ZZ-type |
SuperFamily | SSF46689 | 3.07E-13 | 102 | 156 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51293 | 21.02 | 104 | 156 | IPR017884 | SANT domain |
SMART | SM00717 | 3.4E-12 | 105 | 154 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 9.9E-10 | 108 | 152 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 6.7E-13 | 109 | 150 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 2.22E-12 | 109 | 151 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006357 | Biological Process | regulation of transcription from RNA polymerase II promoter | ||||
GO:0009409 | Biological Process | response to cold | ||||
GO:0016573 | Biological Process | histone acetylation | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0008270 | Molecular Function | zinc ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 405 aa Download sequence Send to blast |
MGRSRNVPHP TEEDFGQSRS KRKRTPSTAE TLEAVTAGQD VTDGKKALYH CNYCNKDISG 60 KIRIKCVMCS DFDLCVECFS VGAEVHPHKS NHPYRVMDNL SFPLICADWN ADEEILLLEG 120 IEMYGLGNWA EVAEHVGTKS KSQCIDHYNT IYMNSLCFPL PDMSHVKGKN REELLAMARD 180 HSETKKGFSS PGEANVTEEP PFSARMKVED QKKEGKAESS SRILTSDVAT GPVSGSSNAL 240 TGGAKRTSGI PESKDGCVEV KVEDRSVGEK KPRTSGDEGP SMEEFSGYNS KRQEFEIEYD 300 NDAEQLLADM EFKEADTDAE RELKLRVLRI YSKRLDERKR RKDFILERNL LYPDPFEKQL 360 LPEEKEICRR YRVFMRFHSK EEHENLLLSL VDEHRILKRI QDLQV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6cw3_E | 9e-36 | 49 | 164 | 5 | 120 | Transcriptional adapter 2 |
6cw3_G | 9e-36 | 49 | 164 | 5 | 120 | Transcriptional adapter 2 |
Search in ModeBase |
Nucleic Localization Signal ? help Back to Top | |||
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No. | Start | End | Sequence |
1 | 337 | 342 | RKRRKD |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Required for the function of some acidic activation domains, which activate transcription from a distant site. The exact mechanism of action is not yet known. ADA2 and GCN5 function to acetylate nucleosomes, opening up the promoter region (By similarity). {ECO:0000250}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_024980297.1 | 0.0 | transcriptional adapter ADA2-like isoform X2 | ||||
Swissprot | Q75LL6 | 1e-173 | TADA2_ORYSJ; Transcriptional adapter ADA2 | ||||
TrEMBL | A0A2R6QEA3 | 0.0 | A0A2R6QEA3_ACTCH; Transcriptional adapter | ||||
STRING | XP_009803647.1 | 0.0 | (Nicotiana sylvestris) |
Publications ? help Back to Top | |||
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