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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5807_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 466aa MW: 51924.1 Da PI: 7.5512 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.5 | 5.5e-06 | 114 | 136 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C++C++ F r nL+ H r+H cra_locus_5807_iso_1_len_1494_ver_3 114 YVCEICNQGFQRDQNLQMHRRRH 136 9*********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 5.59E-5 | 111 | 137 | No hit | No description |
Gene3D | G3DSA:3.30.160.60 | 1.9E-5 | 113 | 136 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.97 | 114 | 136 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.0052 | 114 | 136 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 116 | 136 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009590 | Biological Process | detection of gravity | ||||
GO:0009959 | Biological Process | negative gravitropism | ||||
GO:0009965 | Biological Process | leaf morphogenesis | ||||
GO:0010031 | Biological Process | circumnutation | ||||
GO:0010601 | Biological Process | positive regulation of auxin biosynthetic process | ||||
GO:0048444 | Biological Process | floral organ morphogenesis | ||||
GO:2000012 | Biological Process | regulation of auxin polar transport | ||||
GO:2000904 | Biological Process | regulation of starch metabolic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 466 aa Download sequence Send to blast |
RPGDPSIHTL LSSMSKTKNL CGERERKEKE KSPFSNLXQQ PTNYRIHFLS TTNPKLMLLD 60 NNTTSTGPSS SSDALTSSEN GVTQKRKRRP AGTPDPDAEV VYLSPKTLLE SDRYVCEICN 120 QGFQRDQNLQ MHRRRHKVPW KLLKREENST STDQQQVKKR VFVCPEPSCL HHDPCHALGD 180 LVGKKNILEE NIVISDCGRV FSRVESFIEH QDACSVRRIR PPAVPEVQPL QQQALSAACS 240 SQAASSTSPS SDQTNFSIAP IISSRILINM SNNNIIRPTT NLELQLLPSS SNAANIDHPQ 300 EKIIKCDENN VTKLKLSLGS SGDERPQLLR NEDSSSVAEA VDVAKLKQGA NEQLRMAMAE 360 KAFAEEARQE AKRQMELAEM EFGNAKRIRQ QAQNELEKAQ LLREESIKKI NETISEITCH 420 SCKQKFHHHH HQAHSTNIAA AAAIAVDETS PAMSYMSSAT TDAEGE |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor involved in inflorescence stems gravitropism, probably by regulating starch accumulation in amyloplasts of graviperceptive cells. Required for stem circumnutation movements. Regulates lateral organ morphogenesis and gravitropic responses (PubMed:24039602). Acts cooperatively with IDD16 to control silique and branche orientation (PubMed:24039602). Involved in the establishment of auxin gradients through the regulation of auxin biosynthesis and transport (PubMed:24039602). {ECO:0000269|PubMed:16813575, ECO:0000269|PubMed:18259878, ECO:0000269|PubMed:24039602, ECO:0000269|PubMed:9210330}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00254 | DAP | Transfer from AT2G01940 | Download |
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Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not regulated by auxin. {ECO:0000269|PubMed:24039602}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_007045432.2 | 1e-150 | PREDICTED: protein SHOOT GRAVITROPISM 5 | ||||
Swissprot | F4IPE3 | 1e-110 | IDD15_ARATH; Zinc finger protein SHOOT GRAVITROPISM 5 | ||||
TrEMBL | A0A061EG60 | 1e-148 | A0A061EG60_THECC; C2H2-like zinc finger protein | ||||
TrEMBL | A0A2K1ZH05 | 1e-148 | A0A2K1ZH05_POPTR; Uncharacterized protein | ||||
STRING | EOY01264 | 1e-149 | (Theobroma cacao) |
Publications ? help Back to Top | |||
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