PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5727_iso_1
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 350aa    MW: 39694 Da    PI: 6.865
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5727_iso_1genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B332.12.1e-101786881
                                         -HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEE CS
                                   B3  8 sdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvv 81
                                         + vlk + l lpk+f e++g +   sk ++l ++ g  W+v +  ++  ++++l++G ++F  ++ + +g  + 
  cra_locus_5727_iso_1_len_1691_ver_3 17 PAVLKDKKLLLPKQFNEKYGDE--LSKFVRLINPVGGIWKVAV--ERFHNSVLLSDGLQKFMTDHSIHSGSLLS 86
                                         57889999***********966..8999***************..***********************998765 PP
2B348.71.4e-15253344599
                                          -..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--T CS
                                   B3   5 ltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLke 76 
                                          +++ +  k  ++ +p +f +e+  +     +  + l+d+++++W +++ ++++++ + l++GW +Fv+ ++++ 
  cra_locus_5727_iso_1_len_1691_ver_3 253 MKTYHIYKATIVAVPCSFSREYirS----LPEFINLQDSDNKKWPIRC-IKRCGRVMSLSQGWANFVRNKEVEP 321
                                          4444555556778999999999533....4446***************.355555599**************** PP

                                          T-EEEEEE-SSSEE..EEEEE-S CS
                                   B3  77 gDfvvFkldgrsefelvvkvfrk 99 
                                          gD +vF+ld + ++ l+v +fr+
  cra_locus_5727_iso_1_len_1691_ver_3 322 GDACVFELDPTGDALLKVIIFRA 344
                                          ********988888899999987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.16E-11584IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.105.2E-11595IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.72710105IPR003340B3 DNA binding domain
SMARTSM010190.006111103IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.1E-21241345IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019363.73E-22242345IPR015300DNA-binding pseudobarrel domain
CDDcd100173.44E-19247343No hitNo description
PROSITE profilePS5086314.142249345IPR003340B3 DNA binding domain
PfamPF023628.1E-15249344IPR003340B3 DNA binding domain
SMARTSM010196.5E-11249345IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009909Biological Processregulation of flower development
GO:0010048Biological Processvernalization response
GO:0005654Cellular Componentnucleoplasm
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 350 aa     Download sequence    Send to blast
MKELTHEVES FIRIIIPAVL KDKKLLLPKQ FNEKYGDELS KFVRLINPVG GIWKVAVERF  60
HNSVLLSDGL QKFMTDHSIH SGSLLSSDTE EKQNSMFTCF DLTATEIQYP SSVRPEMPND  120
KILSEGEFCN GAIVVKQNVK EEKEDDEDDG NPSIAIIDSP YPSTRLRSSK RLALMAGQNQ  180
VSKRRKQEAH PRNSDNQSSS SLDVLEPESS NDLNEESCSK RHKSSSRDTK KENKALEAAE  240
SYKTANPSFV VLMKTYHIYK ATIVAVPCSF SREYIRSLPE FINLQDSDNK KWPIRCIKRC  300
GRVMSLSQGW ANFVRNKEVE PGDACVFELD PTGDALLKVI IFRASDFYKD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4i1k_A9e-2321634718145B3 domain-containing transcription factor VRN1
4i1k_B9e-2321634718145B3 domain-containing transcription factor VRN1
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA85571529