![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_5618_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 303aa MW: 33583.2 Da PI: 7.6034 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 21.7 | 4.8e-07 | 243 | 289 | 2 | 46 |
SSS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 2 grWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 g W+ Ed+ l++a k ++++ +W++Ia+ ++ g++ c r + cra_locus_5618_iso_4_len_1561_ver_3 243 GGWSSGEDLALLNALKAFPKEtamRWEKIAAAVP-GKSKAACLKRMNE 289 56********************************.*******888766 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50090 | 5.726 | 151 | 192 | IPR017877 | Myb-like domain |
SMART | SM00717 | 0.0048 | 155 | 208 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 1.25E-5 | 158 | 211 | IPR009057 | Homeodomain-like |
CDD | cd00167 | 0.00436 | 159 | 205 | No hit | No description |
SuperFamily | SSF46689 | 7.8E-10 | 240 | 291 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 8.2E-7 | 241 | 293 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 2.1E-6 | 242 | 296 | IPR009057 | Homeodomain-like |
PROSITE profile | PS50090 | 6.853 | 243 | 291 | IPR017877 | Myb-like domain |
Pfam | PF00249 | 8.2E-6 | 243 | 290 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 4.28E-6 | 245 | 291 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005639 | Cellular Component | integral component of nuclear inner membrane | ||||
GO:0005783 | Cellular Component | endoplasmic reticulum | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 303 aa Download sequence Send to blast |
MEFLDEDARP RFVLQSKASP QSNLPDSQTQ PLHKPTLIIS LSLSTIFLLL SFLYFTSEPL 60 NSLFIWVSLS LLVGPFAPLS LTAGDIRVGL GPPLEEPSKE IEQQSDDNSS KRVSKKSFKF 120 TRKPDDPIIG SDSVSGISSI KTNGSSIQLD NKDEVAEDWI EGEDDLLKKL MGKHPVGKPG 180 RWEAIAEGLK RRHSVENVIK RAKEMGEKKL NDDDSYNKFL KDRKPVDKRI EEGNDEVINI 240 GGGGWSSGED LALLNALKAF PKETAMRWEK IAAAVPGKSK AACLKRMNEL KKDFRTSKAS 300 SES |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription factor involved in the regulation of root hair development, possibly through auxin signaling. Its endoplasmic reticulum membrane localization is not compatible with its transcription factor activity in the nucleus. May be cleaved to target the nucleus. {ECO:0000269|PubMed:21477080}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Induced by auxin. {ECO:0000269|PubMed:21477080}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027079999.1 | 1e-129 | transcription factor MAMYB-like | ||||
Refseq | XP_027080000.1 | 1e-129 | transcription factor MAMYB-like | ||||
Refseq | XP_027080001.1 | 1e-129 | transcription factor MAMYB-like | ||||
Swissprot | Q9ASQ2 | 8e-74 | MAMYB_ARATH; Transcription factor MAMYB | ||||
TrEMBL | A0A068UZ62 | 1e-126 | A0A068UZ62_COFCA; Uncharacterized protein | ||||
STRING | PGSC0003DMT400062221 | 1e-115 | (Solanum tuberosum) |