![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_5600_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | NAC | ||||||||
Protein Properties | Length: 363aa MW: 41143.9 Da PI: 7.8062 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 105.9 | 5e-33 | 93 | 234 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskr 64 lp+G++F+P+d+e++ e+L++k+ +++ + +e+i+++d i++++P++Lp v+++ + +fF+k cra_locus_5600_iso_4_len_1324_ver_3 93 LPAGVKFDPSDQEIL-EHLEAKALSDTrklhplI--DEFIPTLDgengICYTHPEKLP-GVSKDGQIRHFFHKP 162 799***********9.999999988885664322..334665555556**********.555666777****** PP NAM 65 dkkyatgkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128 +k+y+tg+rk+r+++ + +W++tgk+++v++ +g l+g kk+Lv+y gr++k+ekt+Wvmh+y+l cra_locus_5600_iso_4_len_1324_ver_3 163 SKAYTTGTRKRRKVHtdseiggETRWHKTGKTRPVFV-GGILKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 234 ************7443455555788************.**************66589**************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.62E-38 | 85 | 253 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 33.55 | 93 | 253 | IPR003441 | NAC domain |
Pfam | PF02365 | 4.6E-14 | 94 | 234 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 363 aa Download sequence Send to blast |
KILLNTHKTV EXVEESREEN PNWDGHKRKG KEMKWYNNES TRETSLQIVS APPHPPAPDI 60 TKVDEIRTLR CPSCGHTIQL QHQTAILEDL PGLPAGVKFD PSDQEILEHL EAKALSDTRK 120 LHPLIDEFIP TLDGENGICY THPEKLPGVS KDGQIRHFFH KPSKAYTTGT RKRRKVHTDS 180 EIGGETRWHK TGKTRPVFVG GILKGYKKIL VLYTNYGRQR KPEKTNWVMH QYHLGSDEEE 240 KDGELVVSKV FYQTQPRQCN TSTTTTTNVL KQVDNQKILS RQDGGINVNN MVTKSINPPN 300 FMEYYGGSHD HDDEYLSYNV GISQSRGETP PQPHQLIPNM VHVHATDDGS SFIQLPSTAS 360 KAQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00459 | DAP | Transfer from AT4G28500 | Download |
![]() |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_021660928.1 | 1e-140 | NAC domain-containing protein 73-like | ||||
Refseq | XP_021660929.1 | 1e-140 | NAC domain-containing protein 73-like | ||||
Refseq | XP_021660930.1 | 1e-140 | NAC domain-containing protein 73-like | ||||
Refseq | XP_021660931.1 | 1e-140 | NAC domain-containing protein 73-like | ||||
Refseq | XP_021660932.1 | 1e-140 | NAC domain-containing protein 73-like | ||||
Refseq | XP_021660933.1 | 1e-140 | NAC domain-containing protein 73-like | ||||
Swissprot | O49459 | 1e-117 | NAC73_ARATH; NAC domain-containing protein 73 | ||||
TrEMBL | A0A2C9U8J0 | 1e-138 | A0A2C9U8J0_MANES; Uncharacterized protein | ||||
STRING | XP_009797428.1 | 1e-138 | (Nicotiana sylvestris) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2875 | 24 | 54 |
Publications ? help Back to Top | |||
---|---|---|---|
|