PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_5600_iso_4
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family NAC
Protein Properties Length: 363aa    MW: 41143.9 Da    PI: 7.8062
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_5600_iso_4genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM105.95e-33932341128
                                  NAM   1 lppGfrFhPtdeelvveyLkkkvegkk......leleevikevd....iykvePwdLpkkvkaeekewyfFskr 64 
                                          lp+G++F+P+d+e++ e+L++k+ +++      +  +e+i+++d    i++++P++Lp  v+++ +  +fF+k 
  cra_locus_5600_iso_4_len_1324_ver_3  93 LPAGVKFDPSDQEIL-EHLEAKALSDTrklhplI--DEFIPTLDgengICYTHPEKLP-GVSKDGQIRHFFHKP 162
                                          799***********9.999999988885664322..334665555556**********.555666777****** PP

                                  NAM  65 dkkyatgkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgektdWvmheyrl 128
                                          +k+y+tg+rk+r+++       + +W++tgk+++v++ +g l+g kk+Lv+y   gr++k+ekt+Wvmh+y+l
  cra_locus_5600_iso_4_len_1324_ver_3 163 SKAYTTGTRKRRKVHtdseiggETRWHKTGKTRPVFV-GGILKGYKKILVLYtnYGRQRKPEKTNWVMHQYHL 234
                                          ************7443455555788************.**************66589**************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019412.62E-3885253IPR003441NAC domain
PROSITE profilePS5100533.5593253IPR003441NAC domain
PfamPF023654.6E-1494234IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:2000652Biological Processregulation of secondary cell wall biogenesis
GO:0005634Cellular Componentnucleus
GO:0044212Molecular Functiontranscription regulatory region DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
KILLNTHKTV EXVEESREEN PNWDGHKRKG KEMKWYNNES TRETSLQIVS APPHPPAPDI  60
TKVDEIRTLR CPSCGHTIQL QHQTAILEDL PGLPAGVKFD PSDQEILEHL EAKALSDTRK  120
LHPLIDEFIP TLDGENGICY THPEKLPGVS KDGQIRHFFH KPSKAYTTGT RKRRKVHTDS  180
EIGGETRWHK TGKTRPVFVG GILKGYKKIL VLYTNYGRQR KPEKTNWVMH QYHLGSDEEE  240
KDGELVVSKV FYQTQPRQCN TSTTTTTNVL KQVDNQKILS RQDGGINVNN MVTKSINPPN  300
FMEYYGGSHD HDDEYLSYNV GISQSRGETP PQPHQLIPNM VHVHATDDGS SFIQLPSTAS  360
KAQ
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00459DAPTransfer from AT4G28500Download
Motif logo
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_021660928.11e-140NAC domain-containing protein 73-like
RefseqXP_021660929.11e-140NAC domain-containing protein 73-like
RefseqXP_021660930.11e-140NAC domain-containing protein 73-like
RefseqXP_021660931.11e-140NAC domain-containing protein 73-like
RefseqXP_021660932.11e-140NAC domain-containing protein 73-like
RefseqXP_021660933.11e-140NAC domain-containing protein 73-like
SwissprotO494591e-117NAC73_ARATH; NAC domain-containing protein 73
TrEMBLA0A2C9U8J01e-138A0A2C9U8J0_MANES; Uncharacterized protein
STRINGXP_009797428.11e-138(Nicotiana sylvestris)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
AsteridsOGEA28752454
Publications ? help Back to Top
  1. Srinivasasainagendra V,Page GP,Mehta T,Coulibaly I,Loraine AE
    CressExpress: a tool for large-scale mining of expression data from Arabidopsis.
    Plant Physiol., 2008. 147(3): p. 1004-16
    [PMID:18467456]
  2. Sakamoto S,Mitsuda N
    Reconstitution of a secondary cell wall in a secondary cell wall-deficient Arabidopsis mutant.
    Plant Cell Physiol., 2015. 56(2): p. 299-310
    [PMID:25535195]
  3. Jervis J, et al.
    A metabolomic assessment of NAC154 transcription factor overexpression in field grown poplar stem wood.
    Phytochemistry, 2015. 115: p. 112-20
    [PMID:25771508]