 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
cra_locus_5600_iso_2 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
NAC |
| Protein Properties |
Length: 242aa MW: 27575.8 Da PI: 9.731 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_5600_iso_2 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 68.2 | 2.2e-21 | 31 | 113 | 54 | 128 |
NAM 54 eekewyfFskrdkkyatgkrknratk.......sgyWkatgkdkevlskkgelvglkktLvfy..kgrapkgekt 119
+ + +fF+k +k+y+tg+rk+r+++ + +W++tgk+++v++ +g l+g kk+Lv+y gr++k+ekt
cra_locus_5600_iso_2_len_962_ver_3 31 DGQIRHFFHKPSKAYTTGTRKRRKVHtdseiggETRWHKTGKTRPVFV-GGILKGYKKILVLYtnYGRQRKPEKT 104
34455******************7443455555788************.**************66589******* PP
NAM 120 dWvmheyrl 128
+Wvmh+y+l
cra_locus_5600_iso_2_len_962_ver_3 105 NWVMHQYHL 113
*******98 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
| GO:2000652 | Biological Process | regulation of secondary cell wall biogenesis |
| GO:0005634 | Cellular Component | nucleus |
| GO:0044212 | Molecular Function | transcription regulatory region DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 242 aa
Download sequence Send
to blast |
SWVDCDMKYK LLMREGHAFP LIVXYAGVSK DGQIRHFFHK PSKAYTTGTR KRRKVHTDSE 60
IGGETRWHKT GKTRPVFVGG ILKGYKKILV LYTNYGRQRK PEKTNWVMHQ YHLGSDEEEK 120
DGELVVSKVF YQTQPRQCNT STTTTTNVLK QVDNQKILSR QDGGINVNNM VTKSINPPNF 180
MEYYGGSHDH DDEYLSYNVG ISQSRGETPP QPHQLIPNMV HVHATDDGSS FIQLPSTASK 240
AQ
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcriptional activator that plays a regulatory role in the development of secondary cell wall fibers (PubMed:18952777,PubMed:22133261). Involved in the regulation of cellulose and hemicellulose biosynthetic genes as well as of genes involved in lignin polymerization and signaling (PubMed:22133261). Is not a direct target of SND1 (PubMed:18952777). {ECO:0000269|PubMed:18952777, ECO:0000269|PubMed:22133261}. |
