PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_5592_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 391aa MW: 43587.9 Da PI: 8.6949

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_5592_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	21.7	5.4e-07	157	180	1	23
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 y+Cp+Cg+ F+ + +L++H++ H cra_locus_5592_iso_1_len_1639_ver_3 157 YPCPICGEIFPKPNLLEQHQSIkH 180 99******************9888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.785	157	185	IPR007087	Zinc finger, C2H2
SMART	SM00355	0.0056	157	180	IPR015880	Zinc finger, C2H2-like
PROSITE pattern	PS00028	0	159	180	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.06E-13	182	390	No hit	No description
Gene3D	G3DSA:3.90.228.10	3.2E-5	193	294	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain
Gene3D	G3DSA:3.90.228.10	8.7E-5	325	390	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 391 aa Download sequence Send to blast
MASLSSLFSS FLSLLLLIHL ACFNFTTNSA YRQSKKRKIS DPFSSNINRA GHHQSSPPPS 60 SRRLKLTTPK ALSSSWSFLK RLFSSKSSPS TVKSSSPTRP LNKPSSIPSP CSSTRSLTQP 120 IILPDNNHLS DSSLERTALE SDISSTQSFF PLRNDIYPCP ICGEIFPKPN LLEQHQSIKH 180 AVSELIDGDT GKNIVKIIFK TGWPENRMKN PIIHRILKIH NSPKILTRFE EYRECVMSKA 240 VRNGVARCVA DGNELLRFHC TTFLCDLGQN GNSDLCNQQY CSVCGIIKSG FSHKMDGIST 300 LSTSWRAHVS IPEEIEEEFK FMHVKRAMLV CRVIAGRVGC DPEIPDKDDP GFDSLVGCRG 360 TGNHTRLDDE DELLVFNPRA VLPCFAIVYT V

Sequence ? help Back to Top

Protein Sequence Length: 391 aa Download sequence Send to blast

MASLSSLFSS FLSLLLLIHL ACFNFTTNSA YRQSKKRKIS DPFSSNINRA GHHQSSPPPS  60
SRRLKLTTPK ALSSSWSFLK RLFSSKSSPS TVKSSSPTRP LNKPSSIPSP CSSTRSLTQP  120
IILPDNNHLS DSSLERTALE SDISSTQSFF PLRNDIYPCP ICGEIFPKPN LLEQHQSIKH  180
AVSELIDGDT GKNIVKIIFK TGWPENRMKN PIIHRILKIH NSPKILTRFE EYRECVMSKA  240
VRNGVARCVA DGNELLRFHC TTFLCDLGQN GNSDLCNQQY CSVCGIIKSG FSHKMDGIST  300
LSTSWRAHVS IPEEIEEEFK FMHVKRAMLV CRVIAGRVGC DPEIPDKDDP GFDSLVGCRG  360
TGNHTRLDDE DELLVFNPRA VLPCFAIVYT V

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009630930.1	1e-169	PREDICTED: uncharacterized protein LOC104120793
TrEMBL	A0A068ULR4	1e-167	A0A068ULR4_COFCA; Uncharacterized protein
TrEMBL	A0A1S4BRD7	1e-167	A0A1S4BRD7_TOBAC; uncharacterized protein LOC107811098
TrEMBL	A0A1U7W3C2	1e-167	A0A1U7W3C2_NICSY; uncharacterized protein LOC104223368
STRING	XP_009630930.1	1e-168	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA11834	18	21