![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_5375_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | C2H2 | ||||||||
Protein Properties | Length: 271aa MW: 31144.7 Da PI: 9.0164 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 12.6 | 0.00041 | 104 | 127 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirt.H 23 ++C++C+k F+ +L +H + H cra_locus_5375_iso_4_len_1320_ver_3 104 WRCGYCKKIFRAEKYLDQHFDNrH 127 58*****************77666 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 106 | 127 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 271 aa Download sequence Send to blast |
XFILLLVVLS LPVSVYSISS LSQSNLQGTE HPNSRSLKQE DPHVHEVHCS RERSRAAWKV 60 IEEYLMPFVE KEKYQISPQC RLHPSNDLFR DQEEHKIHVD VNEWRCGYCK KIFRAEKYLD 120 QHFDNRHYNL LNANNGKCLA EVCGALHCDL MMDSAPRKSK CNPAAATKNR HLCESLADSC 180 FPVNQGPSAA HLHDFFLRQF CDSHTCSGGK KPFSKGGKKH TSVLYLAASV LILMLLPIFY 240 LLVYLYQREM QKGTQELKRI PKLGRRKTKP S |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027168293.1 | 1e-161 | uncharacterized protein LOC113768223 | ||||
TrEMBL | A0A068V3A7 | 1e-158 | A0A068V3A7_COFCA; Uncharacterized protein | ||||
STRING | XP_009616977.1 | 1e-143 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA8084 | 12 | 16 |