![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_5362_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | MYB_related | ||||||||
Protein Properties | Length: 1830aa MW: 201050 Da PI: 7.827 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 34.4 | 5.3e-11 | 1762 | 1793 | 17 | 48 |
HHTTTT.-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 17 kqlGgg.tWktIartmgkgRtlkqcksrwqkyl 48 kq+G+g +Wk+Ia++m+ gR++ qc rwqk+l cra_locus_5362_iso_4_len_5865_ver_3 1762 KQFGNGrNWKKIAEYMP-GRSDVQCLQRWQKVL 1793 6999999**********.************986 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF15044 | 9.9E-8 | 49 | 120 | IPR028275 | Clustered mitochondria protein, N-terminal |
Pfam | PF12807 | 6.2E-25 | 726 | 867 | IPR033646 | CLU central domain |
CDD | cd15466 | 2.84E-40 | 728 | 868 | IPR033646 | CLU central domain |
Gene3D | G3DSA:1.25.40.10 | 1.6E-20 | 897 | 1112 | IPR011990 | Tetratricopeptide-like helical domain |
SuperFamily | SSF48452 | 4.43E-13 | 903 | 1007 | IPR011990 | Tetratricopeptide-like helical domain |
Pfam | PF13424 | 5.9E-13 | 937 | 1007 | No hit | No description |
SMART | SM00028 | 0.079 | 938 | 971 | IPR019734 | Tetratricopeptide repeat |
PROSITE profile | PS50005 | 8.85 | 938 | 971 | IPR019734 | Tetratricopeptide repeat |
PROSITE profile | PS50293 | 11.922 | 938 | 1055 | IPR013026 | Tetratricopeptide repeat-containing domain |
SuperFamily | SSF48452 | 4.69E-11 | 975 | 1099 | IPR011990 | Tetratricopeptide-like helical domain |
SMART | SM00028 | 250 | 980 | 1013 | IPR019734 | Tetratricopeptide repeat |
PROSITE profile | PS50005 | 5.9 | 980 | 1013 | IPR019734 | Tetratricopeptide repeat |
Pfam | PF13424 | 1.1E-10 | 1021 | 1095 | No hit | No description |
SMART | SM00028 | 31 | 1022 | 1055 | IPR019734 | Tetratricopeptide repeat |
PROSITE profile | PS50005 | 6.343 | 1022 | 1055 | IPR019734 | Tetratricopeptide repeat |
SuperFamily | SSF46689 | 4.79E-9 | 1743 | 1796 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 6.5E-6 | 1743 | 1795 | IPR001005 | SANT/Myb domain |
PROSITE profile | PS51294 | 9.691 | 1757 | 1797 | IPR017930 | Myb domain |
CDD | cd00167 | 3.77E-7 | 1762 | 1793 | No hit | No description |
Gene3D | G3DSA:1.10.10.60 | 4.6E-9 | 1762 | 1796 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.1E-8 | 1762 | 1793 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 1830 aa Download sequence Send to blast |
MAPKSGRGKG NKAKASDKKK KEEKVVPSVL DITVITPYET QVILKGISTD KILDVKKLIA 60 ANVETCHLTN YSLSHEVKGQ KLNDKMEVVT LKPCLLRMVE EDYSEGSQAV AHVRRILDIV 120 ACTTRFGKSK GGSGRANAAA YSAASPSPTA ASAGAESRAK KNNKAQSSSR PSSPINGEVR 180 APGTPAPPVA EGYDMVAIHP IPKLSDFYEF FNFSHLTPPI LSLKRMNRKD GENGREGDHF 240 EMQIKICNGK LIQVVASTKG FYTTGKQFLQ SHSLVDLLQQ LSQAFANAYD SLMKAFMEHN 300 KFGNLPYGFR ANTWLVPPSV SDTASDFVPL PTEDENWGGN GGGQGRHGEY DLRPWASDFA 360 ILASLPCKTE EERVVRDRKA FLLHNLFVEV STLKAVSAIG EVMDSIAKGQ SPLGSVMHED 420 RLGDLFITVK RDDADASLKT AVKTIGSRTS DESSTEVAQR NLLKGVIADE SVVVHDTSSL 480 GVVVVRHCGY TATVKVVGDV KKQKNLRQDI EINDQPEGGA NALNINSLRI LLHKSFTSEA 540 SGEGQSPNSN YINLEKSHIL VQKVVRDSLD KLSKEDIPDR SIRWELGSCW VQHLQKQETP 600 AENSSKMSGG DKKSEPVVKG LGKKFKMLKN RERKPNSSSC VDDNVENNSK VSSTNDESTA 660 AELHNAESES ETELRKIIPK EAYLRLRETG TGLHTKSVNE LVQLAHKYYD EVALPKLVTD 720 FASLELSPVD GRTLTDFMHL RGLQMRSLGR VVELAEKLPH IQSLCIHEMI TRAFKHILKA 780 VIASVDSKAD LPAAIAASLN FLLGSCIIGD NQKYSDVQIL NLEWLRTFLE KRFCWKLNDE 840 FPKLRKLSIL RGLCHKVGLE LAPRDYDMGS PDPFRPSDII SLVPVCKHVG CSSADGRNLL 900 ESSKIALDKG KLEDAVNYGT KALAKMIAVC GPYHRTTASA YSLLAVVLYH TGDFNQATIY 960 QQKALDINER ELGLDHPDTM KSYGDLSVFY YRLQHIELAL KYVNRALFLL HFTCGLSHPN 1020 TAATYINVAM MEEGMGNVHV ALRYLHEALK CNQRLLGADH IQTAASYHAI AIALSLMEAY 1080 SLSVQHEQTT LQILQAKLGL DDLRTQDAAA WLEYFESKAL EQQEAARNGT PKPDASIASK 1140 GHLSVSDLLD YISPDQDSRA IDAQRKRRAK VMPVADKSQQ GQQAEGSNES TTGNETDITV 1200 SKLESNRVET KVENVSVEEP MRKNSSIKDP PVIEEASLEV SSDEGWQEAN SKGRSGSGAG 1260 RKFNRRRPNL AKIKVNSEFN SLGDRNYGKE VTPQGHKAMP KTVSLQVSLQ KHSKAAGMGT 1320 VEDLGKLPTK ALDPRVSPTS ISKVSSGSTT LTAIASKSLS YKDVAVAAPG TVLKPLLEKV 1380 EELKEAKTDT PFSTSTLETS ENEIESVAVD DRSPDHEDTG RVDAGEVHES DTKEDNSSPE 1440 FEDDSSSPND QEKCAETNGS KLSASAQPFS PGAYPLIHPI NSVAPTSVYD VIASQGMLTE 1500 PVSFPSVAAR VPCGPRSPMY YRGNHTFRMK HGFLNYQFPV SEQSAFPSAR IMNPHAPEFV 1560 PRRAWQPNTT TEGSRIATSD SSVDSNPSDP EVSSDEKHDK KDMLEVKGDR PKKSSSDAEK 1620 AELARQILLS FIVKSVKHSS DTPNESPVSE KKPDQFTGNS AEAVANDSAI IKILYGNEGK 1680 TEMVSEAKQN KQTKDADAND GEGFVVVTKR RRNRQHFANG IGLYNQQSIC ASVRXTNWTM 1740 RRACSKFSPD SDMKMDGKTS KKQFGNGRNW KKIAEYMPGR SDVQCLQRWQ KVLNPTPALN 1800 LHHPPILASG ISNSPQAIRR HQEKTGHIQP |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Negatively regulates meristematic tissue proliferation by integrating developmental signals with carbon source availability. May act as the scaffold of a protein complex, which sequesters key factors that are required for the G2 to M transition in meristematic tissues. {ECO:0000269|PubMed:21185286}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: Down-regulated by sucrose. {ECO:0000269|PubMed:21185286}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027167520.1 | 0.0 | protein TSS isoform X2 | ||||
Swissprot | F4JKH6 | 0.0 | TSS_ARATH; Protein TSS | ||||
TrEMBL | A0A068TQB7 | 0.0 | A0A068TQB7_COFCA; Uncharacterized protein | ||||
STRING | Migut.I00746.1.p | 0.0 | (Erythranthe guttata) |
Publications ? help Back to Top | |||
---|---|---|---|
|