 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
cra_locus_53502_iso_1 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
MIKC_MADS |
| Protein Properties |
Length: 135aa MW: 15675.6 Da PI: 8.687 |
| Description |
MIKC_MADS family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_53502_iso_1 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | SRF-TF | 95.4 | 2.6e-30 | 11 | 61 | 1 | 51 |
S---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
SRF-TF 1 krienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
krien++nrqvtfskRr+g+lKKA+E+SvLCdaev +i+fs++gkl+eys+
cra_locus_53502_iso_1_len_403_ver_3 11 KRIENTINRQVTFSKRRAGLLKKAHEISVLCDAEVGLIVFSTKGKLFEYST 61
79***********************************************96 PP
|
| 2 | K-box | 58.4 | 3e-20 | 78 | 135 | 2 | 59 |
K-box 2 qkssgksleeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLe 59
++++ ++++ ++ s++ e+akLk+++e Lqr+qRh+ GedL+sLs+keLq+Le+qL+
cra_locus_53502_iso_1_len_403_ver_3 78 AERQLNATAIETPGSWTLEHAKLKARLEVLQRNQRHYAGEDLDSLSMKELQNLEHQLD 135
667777778888999*****************************************97 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| SMART | SM00432 | 3.0E-40 | 3 | 62 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS50066 | 32.268 | 3 | 63 | IPR002100 | Transcription factor, MADS-box |
| SuperFamily | SSF55455 | 1.7E-34 | 4 | 89 | IPR002100 | Transcription factor, MADS-box |
| CDD | cd00265 | 3.58E-43 | 4 | 81 | No hit | No description |
| PROSITE pattern | PS00350 | 0 | 5 | 59 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.0E-31 | 5 | 25 | IPR002100 | Transcription factor, MADS-box |
| Pfam | PF00319 | 5.5E-25 | 12 | 59 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.0E-31 | 25 | 40 | IPR002100 | Transcription factor, MADS-box |
| PRINTS | PR00404 | 3.0E-31 | 40 | 61 | IPR002100 | Transcription factor, MADS-box |
| PROSITE profile | PS51297 | 10.07 | 90 | 135 | IPR002487 | Transcription factor, K-box |
| Pfam | PF01486 | 1.1E-13 | 92 | 135 | IPR002487 | Transcription factor, K-box |
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0005634 | Cellular Component | nucleus |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0046983 | Molecular Function | protein dimerization activity |
| Sequence ? help Back to Top |
| Protein Sequence Length: 135 aa
Download sequence Send
to blast |
XNMGRGKVEL KRIENTINRQ VTFSKRRAGL LKKAHEISVL CDAEVGLIVF STKGKLFEYS 60
TDSCMERILE RYERYSYAER QLNATAIETP GSWTLEHAKL KARLEVLQRN QRHYAGEDLD 120
SLSMKELQNL EHQLD
|
| Functional Description ? help
Back to Top |
| Source |
Description |
| UniProt | Probable transcription factor. |
