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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_531_iso_6 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 141aa MW: 15882.5 Da PI: 5.0133 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 24.5 | 6.2e-08 | 24 | 69 | 3 | 46 |
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+ E + + +a + + ++ +W ++a +++ g+t +++ ++ cra_locus_531_iso_6_len_1873_ver_3 24 KWTPAENKAFENALAVFDKDtpdRWQRVADMVP-GKTVLDVIRQYRE 69 8********************************.*******999986 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00717 | 2.8E-9 | 21 | 73 | IPR001005 | SANT/Myb domain |
SuperFamily | SSF46689 | 5.23E-12 | 23 | 78 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 7.9E-7 | 24 | 69 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 7.13E-7 | 24 | 70 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 141 aa Download sequence Send to blast |
MEILSPSSYS SNSSWLYEES KSTKWTPAEN KAFENALAVF DKDTPDRWQR VADMVPGKTV 60 LDVIRQYREL EDDVSSIEAG LVPLPGYNTT SPFTLEWGNG HGFDGLKINS YAPTGKRSSS 120 TRPSSDHERK KGVPWTEEEH K |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
2cjj_A | 7e-19 | 25 | 90 | 11 | 76 | RADIALIS |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269|PubMed:11937495, ECO:0000269|PubMed:9118809}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027110574.1 | 1e-73 | transcription factor DIVARICATA-like isoform X1 | ||||
Swissprot | Q8S9H7 | 8e-67 | DIV_ANTMA; Transcription factor DIVARICATA | ||||
TrEMBL | A0A068UL31 | 3e-72 | A0A068UL31_COFCA; Uncharacterized protein | ||||
STRING | XP_006488482.1 | 4e-69 | (Citrus sinensis) | ||||
STRING | XP_006425017.1 | 4e-69 | (Citrus clementina) |
Publications ? help Back to Top | |||
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