PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

MYB

Protein Properties

Length: 310aa MW: 35040.5 Da PI: 9.6831

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_531_iso_11	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	22.6	2.5e-07	24	69	3	46
SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwqk 46 +WT+ E + + +a + + ++ +W ++a +++ g+t +++ ++ cra_locus_531_iso_11_len_1893_ver_3 24 KWTPAENKAFENALAVFDKDtpdRWQRVADMVP-GKTVLDVIRQYRE 69 8******************************.*****999986 PP
2	Myb_DNA-binding	45.7	1.5e-14	134	178	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +WT+eE++l++ + k++G+g+W+ I+r + +Rt+ q+ s+ qky cra_locus_531_iso_11_len_1893_ver_3 134 PWTEEEHKLFLMGLKKYGKGDWRNISRNFVITRTPTQVASHAQKY 178 8***************************99**********9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51293	8.78	20	73	IPR017884	SANT domain
SMART	SM00717	2.8E-9	21	73	IPR001005	SANT/Myb domain
SuperFamily	SSF46689	2.3E-11	23	78	IPR009057	Homeodomain-like
CDD	cd00167	1.10E-6	24	70	No hit	No description
Pfam	PF00249	3.1E-6	24	69	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.4E-13	124	183	IPR009057	Homeodomain-like
PROSITE profile	PS51294	21.59	127	183	IPR017930	Myb domain
SuperFamily	SSF46689	8.97E-17	129	182	IPR009057	Homeodomain-like
TIGRFAMs	TIGR01557	2.0E-17	130	182	IPR006447	Myb domain, plants
SMART	SM00717	3.2E-13	131	181	IPR001005	SANT/Myb domain
Pfam	PF00249	5.6E-13	134	178	IPR001005	SANT/Myb domain
CDD	cd00167	5.41E-11	134	179	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 310 aa Download sequence Send to blast
MEILSPSSYS SNSSWLYEES KSTKWTPAEN KAFENALAVF DKDTPDRWQR VADMVPGKTV 60 LDVIRQYREL EDDVSSIEAG LVPLPGYNTT SPFTLEWGNG HGFDGLKINS YAPTGKRSSS 120 TRPSSDHERK KGVPWTEEEH KLFLMGLKKY GKGDWRNISR NFVITRTPTQ VASHAQKYFI 180 RQLSGGKDKR RASIHDITTV NINDNQIPSP ENRKPPASSS DNSSSQQQQQ RNPTTVHKIP 240 LQWRNQMMMN NNGAAAIMNF NMDHGNNVFM YSNGSQNPSY LGCQSMVFQM QSADQYPHAX 300 WGGGHRLPKX

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
2cjj_A	3e-16	25	90	11	76	RADIALIS
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Involved in the dorsovental asymmetry of flowers. Promotes ventral identity. {ECO:0000269\|PubMed:11937495, ECO:0000269\|PubMed:9118809}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027152581.1	1e-153	transcription factor DIVARICATA
Swissprot	Q8S9H7	1e-137	DIV_ANTMA; Transcription factor DIVARICATA
TrEMBL	A0A068UL31	1e-141	A0A068UL31_COFCA; Uncharacterized protein
STRING	XP_009603384.1	1e-136	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA458	24	140

Publications ? help Back to Top
Galego L,Almeida J Role of DIVARICATA in the control of dorsoventral asymmetry in Antirrhinum flowers. Genes Dev., 2002. 16(7): p. 880-91 [PMID:11937495] Almeida J,Rocheta M,Galego L Genetic control of flower shape in Antirrhinum majus. Development, 1997. 124(7): p. 1387-92 [PMID:9118809]