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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_52574_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 96aa MW: 10962.2 Da PI: 10.1503 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 27 | 1.1e-08 | 47 | 73 | 1 | 27 |
TSSS-HHHHHHHHHHHHHTTTT-HHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktI 27 +g+WT++Ed++l+++++ +G g+W+ cra_locus_52574_iso_1_len_782_ver_3 47 KGAWTKDEDLRLINYIRVHGEGCWRPL 73 79********************88654 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.60 | 4.9E-11 | 38 | 76 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 9.019 | 42 | 94 | IPR017930 | Myb domain |
SuperFamily | SSF46689 | 3.95E-7 | 42 | 77 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 1.4E-6 | 47 | 72 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.92E-4 | 49 | 71 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 96 aa Download sequence Send to blast |
XFQSNSNHPS SSSLPQPFLS PYRIGKIKSS KKLMGRSPCC EKAHTNKGAW TKDEDLRLIN 60 YIRVHGEGCW RPLPKAAXIA EMWKKLQIEM DKLLEA |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. {ECO:0000305}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_012462415.1 | 2e-23 | PREDICTED: transcription repressor MYB6-like | ||||
Refseq | XP_016738951.1 | 2e-23 | PREDICTED: transcription repressor MYB6-like | ||||
Swissprot | P81395 | 3e-23 | MYB30_ANTMA; Myb-related protein 330 | ||||
STRING | Gorai.013G139200.1 | 9e-23 | (Gossypium raimondii) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA15484 | 7 | 7 |
Publications ? help Back to Top | |||
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