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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_5198_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | GRAS | ||||||||
Protein Properties | Length: 488aa MW: 55456.5 Da PI: 6.2027 | ||||||||
Description | GRAS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | GRAS | 327.9 | 1.9e-100 | 140 | 487 | 3 | 345 |
GRAS 3 elLlecAeavssgdlelaqalLarlselaspdgdpmqRlaayfteALaarlarsvselykalppsetseknsse 76 + Lle A+ +++++ +++q+l++ l+el+sp+gd+ q+la+yf++AL +r+++s++++y++l + ++++ + ++ cra_locus_5198_iso_1_len_1504_ver_3 140 DILLETAKSIADKNSNRVQQLMWMLNELSSPYGDTDQKLASYFLQALFNRMTDSGERCYRTLISASEKTCSFES 213 579**********************************************************9666555444444 PP GRAS 77 elaalklfsevsPilkfshltaNqaIleavegeervHiiDfdisqGlQWpaLlqaLasRpegppslRiTgvgsp 150 + + + f+evsP+ +f+h+++N aI+ea+ege+++HiiD++ + ++QWp+Ll+aLa+R++++p+lR+T+v+ cra_locus_5198_iso_1_len_1504_ver_3 214 TRKLVLKFQEVSPWTTFGHVACNGAIMEAFEGENKLHIIDISNTFCTQWPTLLEALATRTDETPHLRLTAVVVT 287 4444445******************************************************************8 PP GRAS 151 esg.....skeeleetgerLakfAeelgvpfefnvlvak.rledleleeLrvkpgEalaVnlvlqlhrlldesv 218 +sg ++ ++e+g+r++kfA+ +gvpf+fnvl+++ +l+dl+l eL++k++Eala+n+v +lh++ cra_locus_5198_iso_1_len_1504_ver_3 288 KSGgssggAQKVMKEIGSRMEKFARLMGVPFKFNVLHHTgDLSDLNLAELEIKEDEALAINSVGALHSVS---- 357 8889999999**************************8888*****************************8.... PP GRAS 219 sleserdevLklvkslsPkvvvvveqeadhnse....sFlerflealeyysalfdsleaklpreseerikvEre 288 ++ ++rd +++++++l+P++v+vve+ead++ + +F+++f ++l+++ + f+sl++++p++s+er ++Er+ cra_locus_5198_iso_1_len_1504_ver_3 358 PIGNRRDYLISIFRRLQPRIVTVVEEEADLEIGvdgfEFVKGFQQCLNWFRVYFESLDESFPKTSNERLMLERQ 431 99999**********************99855455669************************************ PP GRAS 289 llgreivnvvacegaerrerhetlekWrerleeaGFkpvplsekaakqaklllrkvk 345 gr+iv++vac +e++er+et+++W++rl++ GF pv++s+++ +++++llr++ cra_locus_5198_iso_1_len_1504_ver_3 432 -AGRAIVDLVACPPSESIERRETAARWSHRLHAGGFVPVSFSDEVCDDVRALLRRYT 487 .*****************************************************985 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50985 | 49.852 | 112 | 488 | IPR005202 | Transcription factor GRAS |
Pfam | PF03514 | 6.6E-98 | 140 | 487 | IPR005202 | Transcription factor GRAS |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0008356 | Biological Process | asymmetric cell division | ||||
GO:0009956 | Biological Process | radial pattern formation | ||||
GO:0045930 | Biological Process | negative regulation of mitotic cell cycle | ||||
GO:0048366 | Biological Process | leaf development | ||||
GO:0055072 | Biological Process | iron ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 488 aa Download sequence Send to blast |
MDTLFRLVSL QSDQSFNSTS RTNSSSSKSS KQNHFHHQED QEEEECFNFF MDEEDFSSSS 60 SKHNYNPYHH HQPSTTPTPT TTTPTTSTPP THQHHQPYES SSSXHHHQQQ QQQHHHFSFS 120 PAHDISLEFA SSFSGKWSLD ILLETAKSIA DKNSNRVQQL MWMLNELSSP YGDTDQKLAS 180 YFLQALFNRM TDSGERCYRT LISASEKTCS FESTRKLVLK FQEVSPWTTF GHVACNGAIM 240 EAFEGENKLH IIDISNTFCT QWPTLLEALA TRTDETPHLR LTAVVVTKSG GSSGGAQKVM 300 KEIGSRMEKF ARLMGVPFKF NVLHHTGDLS DLNLAELEIK EDEALAINSV GALHSVSPIG 360 NRRDYLISIF RRLQPRIVTV VEEEADLEIG VDGFEFVKGF QQCLNWFRVY FESLDESFPK 420 TSNERLMLER QAGRAIVDLV ACPPSESIER RETAARWSHR LHAGGFVPVS FSDEVCDDVR 480 ALLRRYTQ |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5b3h_B | 0.0 | 97 | 488 | 2 | 389 | Protein SHORT-ROOT |
5b3h_E | 0.0 | 97 | 488 | 2 | 389 | Protein SHORT-ROOT |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor required for quiescent center cells specification and maintenance of surrounding stem cells, and for the asymmetric cell division involved in radial pattern formation in roots. Essential for both cell division and cell specification. Regulates the radial organization of the shoot axial organs and is required for normal shoot gravitropism. Directly controls the transcription of SCR, and when associated with SCR, of MGP, RLK, TRI, NUC and SCL3. {ECO:0000269|PubMed:10850497, ECO:0000269|PubMed:12569126, ECO:0000269|PubMed:15314023, ECO:0000269|PubMed:16640459, ECO:0000269|PubMed:17446396, ECO:0000269|PubMed:9670559}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027178958.1 | 0.0 | protein SHORT-ROOT | ||||
Swissprot | Q9SZF7 | 0.0 | SHR_ARATH; Protein SHORT-ROOT | ||||
TrEMBL | A0A068U370 | 0.0 | A0A068U370_COFCA; Uncharacterized protein | ||||
STRING | VIT_07s0129g00030.t01 | 0.0 | (Vitis vinifera) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2031 | 24 | 64 |