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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
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| TF ID |
cra_locus_5081_iso_6 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
| Family |
NAC |
| Protein Properties |
Length: 281aa MW: 32604.6 Da PI: 7.4896 |
| Description |
NAC family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| cra_locus_5081_iso_6 | genome | MPGR | - |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | NAM | 170.7 | 4.6e-53 | 6 | 131 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrk 74
lppGfrFhPtdeel+++yLk++++++++++ ++i+evdiyk++Pw+Lp k + +e+ewyfF++rd+ky++g r+
cra_locus_5081_iso_6_len_1480_ver_3 6 LPPGFRFHPTDEELIMYYLKNQATSRPCPV-SIIPEVDIYKFDPWELPGKXEFGENEWYFFTPRDRKYPNGVRP 78
79****************************.89***************988999******************** PP
NAM 75 nratksgyWkatgkdkevlskkgelvglkktLvfykgrapkgektdWvmheyrl 128
nra+ sgyWkatg+dk+++s +++ vg+kk Lvfy+g+ pkg k+dW+mheyrl
cra_locus_5081_iso_6_len_1480_ver_3 79 NRAAVSGYWKATGTDKSIYS-GSKYVGVKKALVFYQGKPPKGIKSDWIMHEYRL 131
********************.999****************************98 PP
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| Sequence ? help Back to Top |
| Protein Sequence Length: 281 aa
Download sequence Send
to blast |
MVGGNLPPGF RFHPTDEELI MYYLKNQATS RPCPVSIIPE VDIYKFDPWE LPGKXEFGEN 60
EWYFFTPRDR KYPNGVRPNR AAVSGYWKAT GTDKSIYSGS KYVGVKKALV FYQGKPPKGI 120
KSDWIMHEYR LIESRSQVPT KQNGSMRLDD WVLCRIYKKK NLGKLSMDIK VEDQSQETLV 180
ANELVTSHDD EQQQQTFKFP RPCSLSHLWE MDYMGSIPQI FGENSIFDQQ NMFMLNNNNN 240
NNGNVNTPRQ LGDQMGNQYS EAMVRFQGNQ PVYVNPVFEF Q
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| 3D Structure ? help Back to Top |
 |
| PDB ID |
Evalue |
Query Start |
Query End |
Hit Start |
Hit End |
Description |
| 1ut4_A | 4e-72 | 5 | 161 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut4_B | 4e-72 | 5 | 161 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_A | 4e-72 | 5 | 161 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
| 1ut7_B | 4e-72 | 5 | 161 | 16 | 167 | NO APICAL MERISTEM PROTEIN |
| 3swm_A | 4e-72 | 5 | 161 | 19 | 170 | NAC domain-containing protein 19 |
| 3swm_B | 4e-72 | 5 | 161 | 19 | 170 | NAC domain-containing protein 19 |
| 3swm_C | 4e-72 | 5 | 161 | 19 | 170 | NAC domain-containing protein 19 |
| 3swm_D | 4e-72 | 5 | 161 | 19 | 170 | NAC domain-containing protein 19 |
| 3swp_A | 4e-72 | 5 | 161 | 19 | 170 | NAC domain-containing protein 19 |
| 3swp_B | 4e-72 | 5 | 161 | 19 | 170 | NAC domain-containing protein 19 |
| 3swp_C | 4e-72 | 5 | 161 | 19 | 170 | NAC domain-containing protein 19 |
| 3swp_D | 4e-72 | 5 | 161 | 19 | 170 | NAC domain-containing protein 19 |
| 4dul_A | 4e-72 | 5 | 161 | 16 | 167 | NAC domain-containing protein 19 |
| 4dul_B | 4e-72 | 5 | 161 | 16 | 167 | NAC domain-containing protein 19 |
| Search in ModeBase |
| Functional Description ? help
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| Source |
Description |
| UniProt | Transcription factor that binds DNA motifs 5'-CGT[AG](5N)NACG[ACT][AC][AT][ACG][ACT]-3' and 5'-CACG[ACT][AC][AT][AGT][CT]-3' in target genes promoters. Promotes leaf senescence and reduces fruit yield and sugar content, probably by establishing abscisic acid (ABA) homeostasis. {ECO:0000269|PubMed:29760199}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Accumulates during age-dependent and dark-induced leaf senescence. {ECO:0000269|PubMed:29760199}. |
