PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Binding Motif |

Basic Information? help Back to Top

TF ID

cra_locus_507_iso_4

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HD-ZIP

Protein Properties

Length: 369aa MW: 40923 Da PI: 4.3724

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_507_iso_4	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	59.6	5e-19	58	111	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k+++++ +q+++Le+ Fe ++++ e++ +LA++lgL+ rqV vWFqNrRa++k cra_locus_507_iso_4_len_1946_ver_3 58 KKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWK 111 566899***********************************************9 PP
2	HD-ZIP_I/II	130.2	8.4e-42	57	149	1	93
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalke 75 ekkrrls +qvk+LE++Fe e+kLeperKv+la+eLglqprqvavWFqnrRAR+ktkqlE+dy Lk++y++lk+ cra_locus_507_iso_4_len_1946_ver_3 57 EKKRRLSVDQVKALEKNFEVENKLEPERKVKLAQELGLQPRQVAVWFQNRRARWKTKQLERDYGILKANYESLKH 131 69*********************************************************************** PP HD-ZIP_I/II 76 enerLekeveeLreelke 93 + e+L++++e+L +e++e cra_locus_507_iso_4_len_1946_ver_3 132 SYESLQHDNEALVKEIRE 149 ***********99986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	3.01E-19	44	115	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.281	53	113	IPR001356	Homeobox domain
SMART	SM00389	4.4E-18	56	117	IPR001356	Homeobox domain
Pfam	PF00046	3.2E-16	58	111	IPR001356	Homeobox domain
CDD	cd00086	7.18E-17	58	114	No hit	No description
Gene3D	G3DSA:1.10.10.60	7.5E-20	60	119	IPR009057	Homeodomain-like
PRINTS	PR00031	1.1E-5	84	93	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	88	111	IPR017970	Homeobox, conserved site
PRINTS	PR00031	1.1E-5	93	109	IPR000047	Helix-turn-helix motif
Pfam	PF02183	1.4E-18	113	155	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009414	Biological Process	response to water deprivation
GO:0009788	Biological Process	negative regulation of abscisic acid-activated signaling pathway
GO:0045893	Biological Process	positive regulation of transcription, DNA-templated
GO:0005634	Cellular Component	nucleus
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 369 aa Download sequence Send to blast
MKRLGSSDSL GALMSICPTS ADEHNQGNSH VYPREFQSML EGLDEEGCVE ESGHIPEKKR 60 RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG 120 ILKANYESLK HSYESLQHDN EALVKEIREL KGKLQEDKME SKISVKEEGM MMMVSDECEE 180 ERAKRAPPQM VDIIPECCDD EEDDINEATD LNFESFKNNN GGGGGLIMGS SLFTDFKDGS 240 SDSDSSAILN EENNNNNIST SPNNNAAISS SSAAGGGGGV GGILVQSPHQ FFNCSSINGF 300 QFSTDSKEEI LLGGDATAHK AEAAASAYQP QFVKIEEHNF FSGDESCSTF FSDDQPPSLH 360 WGDCPEDWN

Sequence ? help Back to Top

Protein Sequence Length: 369 aa Download sequence Send to blast

MKRLGSSDSL GALMSICPTS ADEHNQGNSH VYPREFQSML EGLDEEGCVE ESGHIPEKKR  60
RLSVDQVKAL EKNFEVENKL EPERKVKLAQ ELGLQPRQVA VWFQNRRARW KTKQLERDYG  120
ILKANYESLK HSYESLQHDN EALVKEIREL KGKLQEDKME SKISVKEEGM MMMVSDECEE  180
ERAKRAPPQM VDIIPECCDD EEDDINEATD LNFESFKNNN GGGGGLIMGS SLFTDFKDGS  240
SDSDSSAILN EENNNNNIST SPNNNAAISS SSAAGGGGGV GGILVQSPHQ FFNCSSINGF  300
QFSTDSKEEI LLGGDATAHK AEAAASAYQP QFVKIEEHNF FSGDESCSTF FSDDQPPSLH  360
WGDCPEDWN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	105	113	RRARWKTKQ

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00271	DAP	Transfer from AT2G22430	Download

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027074840.1	1e-165	homeobox-leucine zipper protein ATHB-6
Refseq	XP_027179939.1	1e-165	homeobox-leucine zipper protein ATHB-6-like
TrEMBL	A0A068U003	1e-164	A0A068U003_COFCA; Uncharacterized protein
STRING	XP_004288161.1	1e-127	(Fragaria vesca)