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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4762_iso_7 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | C2H2 | ||||||||
Protein Properties | Length: 214aa MW: 24668.6 Da PI: 7.3587 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 18.6 | 5e-06 | 10 | 34 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirtH 23 + Cp dCgk++ + + Lk+Hi++H cra_locus_4762_iso_7_len_1214_ver_3 10 HICPyaDCGKRYAHEYKLKNHISSH 34 68**********************6 PP | |||||||
2 | zf-C2H2 | 17.1 | 1.6e-05 | 72 | 97 | 1 | 23 |
EEET..TTTEEESSHHHHHHHHHH.T CS zf-C2H2 1 ykCp..dCgksFsrksnLkrHirt.H 23 y+Cp C+k + + + L+ H+r+ H cra_locus_4762_iso_7_len_1214_ver_3 72 YTCPyeGCDKAYIHEYKLNLHLRReH 97 9***********************99 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:3.30.160.60 | 1.7E-8 | 1 | 36 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 7.05E-6 | 1 | 36 | No hit | No description |
SMART | SM00355 | 0.0069 | 10 | 34 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 9.245 | 10 | 39 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 12 | 35 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 4.4E-9 | 66 | 95 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
SuperFamily | SSF57667 | 2.85E-6 | 66 | 95 | No hit | No description |
SMART | SM00355 | 0.0019 | 72 | 97 | IPR015880 | Zinc finger, C2H2-like |
PROSITE profile | PS50157 | 10.097 | 72 | 102 | IPR007087 | Zinc finger, C2H2 |
PROSITE pattern | PS00028 | 0 | 74 | 97 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0045892 | Biological Process | negative regulation of transcription, DNA-templated | ||||
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 214 aa Download sequence Send to blast |
MKTHSQENYH ICPYADCGKR YAHEYKLKNH ISSHHEKNVV EPTKYVPPAE KPVKTPKSSN 60 ATYASASSDR PYTCPYEGCD KAYIHEYKLN LHLRREHPGH SKEENAKNVQ FTADNDMDEA 120 SDHDPYPAKR SNDKKPSRSK PNLKLPPAKV AQRKGSTASQ ANMSVMKKQW PVKEEVYDEE 180 DSEETEEERD NVVMVGDMQX XXXXXXXXXX RDRV |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Dual-function transcription factor with both repression and activation activities. Binds to 5'-CCATATT-3' motif in target gene promoters (e.g. ABR1) (PubMed:26961720). Binds also to G-rich DNA motif 5'-GGGGGCAGTGG-3' (PubMed:22508367). Regulates the expression of genes involved in diverse cellular pathways, including glucose metabolism, photosynthesis, phototropism and stress response (e.g. salt, drought and osmotic stress) (PubMed:22508367, PubMed:26961720). Regulates plant immunity, especially during necrotrophic fungal infection (e.g. B.cinerea) (PubMed:24451981). Binds to ABR1 promoter and promotes its expression, thus negatively regulating the abscisic acid (ABA) signaling pathway. Represses ABA- and salt-responsive genes expression (PubMed:26961720). {ECO:0000269|PubMed:22508367, ECO:0000269|PubMed:24451981, ECO:0000269|PubMed:26961720}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by abscisic acid (ABA) in an ABI1- and ABI4-dependent manner. Stimulated by stress conditions including high salt, osmotic stress (e.g. mannitol) and dehydration. May be induced by ABI4 but repressed by ABR1. Repressed by darkness but induced by light. {ECO:0000269|PubMed:26961720}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027162703.1 | 5e-86 | zinc finger transcription factor YY1 | ||||
Swissprot | Q2V3L3 | 5e-60 | YY1_ARATH; Zinc finger transcription factor YY1 | ||||
TrEMBL | A0A0D2QA25 | 3e-85 | A0A0D2QA25_GOSRA; Uncharacterized protein | ||||
TrEMBL | A0A2N9HQ80 | 4e-85 | A0A2N9HQ80_FAGSY; Uncharacterized protein | ||||
STRING | Gorai.002G214700.1 | 3e-84 | (Gossypium raimondii) |
Publications ? help Back to Top | |||
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