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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4752_iso_3 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | SBP | ||||||||
Protein Properties | Length: 556aa MW: 60858.5 Da PI: 7.0207 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 133.1 | 9.1e-42 | 174 | 249 | 2 | 77 |
-SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S CS SBP 2 CqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrk 75 Cqv+gC++dls+ k+yh+rhkvCe+hsk+++v+v+g+eqrfCqqCsrfh l efD++krsCr+rLa+hnerrrk cra_locus_4752_iso_3_len_2618_ver_3 174 CQVHGCKKDLSSSKDYHKRHKVCEIHSKTAKVIVNGTEQRFCQQCSRFHLLAEFDDGKRSCRKRLAGHNERRRK 247 ************************************************************************** PP -- CS SBP 76 kq 77 ++ cra_locus_4752_iso_3_len_2618_ver_3 248 PH 249 86 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.5E-34 | 167 | 235 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 32.684 | 171 | 248 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 6.93E-39 | 172 | 252 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 1.2E-31 | 174 | 247 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010468 | Biological Process | regulation of gene expression | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 556 aa Download sequence Send to blast |
MESWSYISGG KNFVSDESVS ATDGIARGKN GFMGWDLKSS SSFENISLMC SSQEGIKNQE 60 FIELGSSDMI RKSLVNDSIT DVFSSQYGYG RVYNPVTAPP NTVSGEEESS SKLSSSIVDS 120 NCWDSSLIDL KLGRFPDHKD VQPKVNASNF SSTESPIPTK RARAGSLSSQ TPFCQVHGCK 180 KDLSSSKDYH KRHKVCEIHS KTAKVIVNGT EQRFCQQCSR FHLLAEFDDG KRSCRKRLAG 240 HNERRRKPHI GMHSGRAGRL FQSYNGTRYQ GTSFALSSFV CQDILPGSLL HQQKCEMNDW 300 YKNVKVEDEA DYSPQLGIPN TKGQTHSKSH LTSFSAEKQC PPSMHDDGLI AVTRSEMQEN 360 SNSFLHSMST SDFDSRSLFN NSSLGNEELT VLDSSSTVQG LPALSSSGCA LSLLSSQPQK 420 SSNQSSGIPT ALPLITPSSH SHYNVTQVSE KLMRVSPQTS TSGVSNAFHS SGINSTEETQ 480 MEPILMSDGI DSVSYGINGI IHGSGYINAK DSVSCGDGSS TIDLLQLSSQ LQRVEHQRQS 540 MQVKQETDAF FGLRIT |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul4_A | 2e-29 | 168 | 247 | 5 | 84 | squamosa promoter binding protein-like 4 |
Search in ModeBase |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_022737694.1 | 0.0 | squamosa promoter-binding-like protein 13A | ||||
TrEMBL | A0A061G524 | 0.0 | A0A061G524_THECC; LIGULELESS1 protein, putative | ||||
STRING | EOY22129 | 0.0 | (Theobroma cacao) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA5187 | 16 | 39 |