PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_4736_iso_3

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 448aa MW: 51468.4 Da PI: 6.6383

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4736_iso_3	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	75.9	6.6e-24	121	218	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykk 63 +Wt+ +v++Li+a+++++e+ ++ +kk++W++vsk+m+erg +sp+qC++k+++lnkryk+ cra_locus_4736_iso_3_len_2718_ver_3 121 KWTDTMVRLLITAVSYIGEEAASEYgggarrkcanlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKR 194 7************999888864333445567788********************************** PP trihelix 64 ikegekkr.tsessstcpyfdqle 86 ++e+ +++ ++e++++ ++ d ++ cra_locus_4736_iso_3_len_2718_ver_3 195 LNEILGRGtSCEVVENPSLMDMMN 218 ******6699999999988886 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	2.3E-22	119	244	No hit	No description

Sequence ? help Back to Top
Protein Sequence Length: 448 aa Download sequence Send to blast
MEGNLPSGTM MPGSGPFGTL DLQGSMRVHH HQQHPFTLHQ PHHHSHSRQG SIVPPTIHEN 60 FPLTIGSTQE HDHSISLSDF NKGEKAKSAS DEDEMTFTEE GADCSNDGSK GKKAFPWQRV 120 KWTDTMVRLL ITAVSYIGEE AASEYGGGAR RKCANLQKKG KWKSVSKVMA ERGHFVSPQQ 180 CEDKFNDLNK RYKRLNEILG RGTSCEVVEN PSLMDMMNHI SEKAKEEVRK ILSSKHLHYE 240 EMCSYHNGNR LHLPPDPELQ RSLRLALRSR DDSDDANTRR HAHDDNDEDD HDAELYEHDE 300 NEENHALLGD HMAYGIPGCS PKRVKQSHSR EDVSFGNSLS SLDCNRNLQC QPQSSNADAN 360 QVSPDGLKAN LLQKQWMSHR TLQLEEQKLQ IQAQMLELER ERFKWQRFSQ KKDRELEMMK 420 IENERMKLEN ERMALELKRK EMTDLNMN

Sequence ? help Back to Top

Protein Sequence Length: 448 aa Download sequence Send to blast

MEGNLPSGTM MPGSGPFGTL DLQGSMRVHH HQQHPFTLHQ PHHHSHSRQG SIVPPTIHEN  60
FPLTIGSTQE HDHSISLSDF NKGEKAKSAS DEDEMTFTEE GADCSNDGSK GKKAFPWQRV  120
KWTDTMVRLL ITAVSYIGEE AASEYGGGAR RKCANLQKKG KWKSVSKVMA ERGHFVSPQQ  180
CEDKFNDLNK RYKRLNEILG RGTSCEVVEN PSLMDMMNHI SEKAKEEVRK ILSSKHLHYE  240
EMCSYHNGNR LHLPPDPELQ RSLRLALRSR DDSDDANTRR HAHDDNDEDD HDAELYEHDE  300
NEENHALLGD HMAYGIPGCS PKRVKQSHSR EDVSFGNSLS SLDCNRNLQC QPQSSNADAN  360
QVSPDGLKAN LLQKQWMSHR TLQLEEQKLQ IQAQMLELER ERFKWQRFSQ KKDRELEMMK  420
IENERMKLEN ERMALELKRK EMTDLNMN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027119506.1	0.0	uncharacterized protein LOC113736645
TrEMBL	A0A068UNC0	0.0	A0A068UNC0_COFCA; Uncharacterized protein
STRING	XP_009590352.1	0.0	(Nicotiana tomentosiformis)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA7600	18	30