PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID cra_locus_4692_iso_2
Organism
Catharanthus roseus
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
Family B3
Protein Properties Length: 277aa    MW: 30312.5 Da    PI: 8.8193
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
cra_locus_4692_iso_2genomeMPGR-
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B373.82.1e-23134235199
                                          EEEE-..-HHHHTT-EE--HHH.HTT.......---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHH CS
                                   B3   1 ffkvltpsdvlksgrlvlpkkfaeeh.......ggkkeesktltledesgrsWevkliyrkksgryvltkGWke 67 
                                          f+k+lt sd++++g +++p++ ae++       ++++++  +l+ +d++ ++W++++iyr++++r++lt+GW+ 
  cra_locus_4692_iso_2_len_1532_ver_3 134 FCKTLTASDTSTHGGFSVPRRAAEKIfppldftMQPPAQ--ELVARDLHDNVWTFRHIYRGQPKRHLLTTGWSL 205
                                          99*****************************96555444..8******************************** PP

                                          HHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
                                   B3  68 FvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                                          Fv+ ++L +gD+v+F   ++++++l+++++r+
  cra_locus_4692_iso_2_len_1532_ver_3 206 FVSGKRLFAGDSVLFI--RDEKQQLLLGIRRA 235
                                          ****************..5688889****997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019361.7E-44124263IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.103.8E-42125249IPR015300DNA-binding pseudobarrel domain
CDDcd100171.40E-20133225No hitNo description
SMARTSM010197.2E-23134236IPR003340B3 DNA binding domain
PROSITE profilePS5086311.942134236IPR003340B3 DNA binding domain
PfamPF023622.0E-21134235IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0010311Biological Processlateral root formation
GO:0048366Biological Processleaf development
GO:0005634Cellular Componentnucleus
GO:0043565Molecular Functionsequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 277 aa     Download sequence    Send to blast
MKTSANGAGA PLATASGNPT EGEKKSINPE LWQACAGPLV NLPAAGTHVV YFPQGHSEQV  60
AASMKKDVDA QIPNYPNLPS KLLCLLHNVT LHADPETDEV YAQMTLQPVP SFDKDALLRS  120
DLTMKANKPQ TEFFCKTLTA SDTSTHGGFS VPRRAAEKIF PPLDFTMQPP AQELVARDLH  180
DNVWTFRHIY RGQPKRHLLT TGWSLFVSGK RLFAGDSVLF IRDEKQQLLL GIRRANRQPT  240
NLSSSVLSSD SMHIGILAAA AHAAANNSPF TVFYNPR
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
4ldu_A1e-1292327747301Auxin response factor 5
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtAuxin response factors (ARFs) are transcriptional factors that bind specifically to the DNA sequence 5'-TGTCTC-3' found in the auxin-responsive promoter elements (AuxREs).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_016515513.11e-175PREDICTED: auxin response factor 19-like
RefseqXP_016580257.11e-174PREDICTED: auxin response factor 19-like
SwissprotQ0D9R71e-149ARFS_ORYSJ; Auxin response factor 19
TrEMBLA0A1S4DQ131e-174A0A1S4DQ13_TOBAC; Auxin response factor
TrEMBLA0A2G2WBM61e-173A0A2G2WBM6_CAPBA; Auxin response factor
STRINGXP_009594540.11e-173(Nicotiana tomentosiformis)
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Zhang S, et al.
    The auxin response factor, OsARF19, controls rice leaf angles through positively regulating OsGH3-5 and OsBRI1.
    Plant Cell Environ., 2015. 38(4): p. 638-54
    [PMID:24995795]