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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4684_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | MYB_related | ||||||||
Protein Properties | Length: 500aa MW: 54564.2 Da PI: 8.7704 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 50.8 | 4e-16 | 56 | 100 | 1 | 47 |
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 r rWT+eE++++++a k++G W++I +++g +t+ q++s+ qk+ cra_locus_4684_iso_4_len_2662_ver_3 56 RERWTEEEHKKFLEALKLYGRA-WRRIEEHVG-SKTAVQIRSHAQKF 100 78******************88.*********.************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.79E-16 | 50 | 104 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 21.107 | 51 | 105 | IPR017930 | Myb domain |
TIGRFAMs | TIGR01557 | 4.7E-17 | 54 | 103 | IPR006447 | Myb domain, plants |
SMART | SM00717 | 4.0E-13 | 55 | 103 | IPR001005 | SANT/Myb domain |
Gene3D | G3DSA:1.10.10.60 | 1.5E-9 | 56 | 96 | IPR009057 | Homeodomain-like |
Pfam | PF00249 | 2.4E-13 | 56 | 99 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 3.48E-10 | 58 | 101 | No hit | No description |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0007623 | Biological Process | circadian rhythm | ||||
GO:0009734 | Biological Process | auxin-activated signaling pathway | ||||
GO:0010600 | Biological Process | regulation of auxin biosynthetic process | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 500 aa Download sequence Send to blast |
MAIQGQSNNS ESSSTISIGN QISLHVDIPS TKNEQFQCED DCLPKVRKPY TITKQRERWT 60 EEEHKKFLEA LKLYGRAWRR IEEHVGSKTA VQIRSHAQKF FSKVVRESTN GDSGSGKVIE 120 IPPPRPKRKP LHPYPRKLVS PAKSGTATSQ KLTQTVSPNI SSPAEEHQSP TSVLSAPCSD 180 TPGTTDSATS DGSESLSPIS SVVGAKSVGF VLSELPDLTS ETKRSPSSSQ VNSSADNKSP 240 STSQVNNCAN QADQLHLKLE LFPQDNAFDK EGSVEVSSSQ IFKLFGKTVL VIDPSRPSSS 300 TPGAGKVQPS HQNDGKSNST KVPLGESECL RRALPCKARG NLYPSSLQRE CPDTLLCGPF 360 HSLPWLMMYQ GDSSASFVQV HSPIAIKAQP LLDKKELHRV QSCKGGSSTG SDAESESIET 420 VEDKNIEVKF RELSQEGEVQ KQKLPLLKPG AKAASFFRQK ANSSKCGKGF VPYKRCLSDR 480 DTLSAITGEE REEQRVRLCL |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00515 | DAP | Transfer from AT5G17300 | Download |
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Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027075006.1 | 1e-149 | protein REVEILLE 1-like isoform X1 | ||||
TrEMBL | A1DR85 | 0.0 | A1DR85_CATRO; MYB transcription factor (Fragment) |