PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_46395_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

HB-other

Protein Properties

Length: 320aa MW: 36361.3 Da PI: 7.9418

Description

HB-other family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_46395_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	20.4	8.7e-07	70	126	1	57
TT--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS Homeobox 1 rrkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57 +r+R ++++ ++ +++ F + +s++e +e+++ g+t +qV+ +F +R + +k cra_locus_46395_iso_1_len_1306_ver_3 70 KRPRDLLNPKAIKYMQSIFSIKDAISKKETREISALFGVTATQVRDFFNSQRSRVRK 126 799***************************************************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:1.10.10.60	8.7E-6	66	121	IPR009057	Homeodomain-like
PROSITE profile	PS50071	9.847	67	127	IPR001356	Homeobox domain
SMART	SM00389	0.0068	69	131	IPR001356	Homeobox domain
SuperFamily	SSF46689	1.07E-6	69	129	IPR009057	Homeodomain-like
CDD	cd00086	4.26E-4	70	126	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009911	Biological Process	positive regulation of flower development
GO:0010228	Biological Process	vegetative to reproductive phase transition of meristem
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MELLASENQL QLVVSESAKS LPDLLYSQRE LFRSQIDELE NIVLTQCKLT GVNPLSQEMA 60 AGALSIKIGK RPRDLLNPKA IKYMQSIFSI KDAISKKETR EISALFGVTA TQVRDFFNSQ 120 RSRVRKFIRL SREKADRSIS SKQMQEQQGE LPVNIDPNEP LNPVPLDSVA PISIEEAPTC 180 SKEDEALPAI DESDKHFVEN IFSLMRKEET FSGQVKLMEW ILQIQNSSVL FWFLTKGGIM 240 ILATWLSQAV VEEQTSVLNV ILKVLCHLPL QKALPVHMSA VLQSVNRLRF YRASDVLLMQ 300 MIAEKCLRSY AYRWMGMLLT

Functional Description ? help Back to Top
Source	Description
UniProt	Seems to play a role in the regulation of flowering time in the autonomous flowering pathway by repressing FLOWERING LOCUS C expression. {ECO:0000269\|PubMed:10363371}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027127357.1	1e-158	homeobox protein LUMINIDEPENDENS-like
Swissprot	Q38796	1e-118	LUMI_ARATH; Homeobox protein LUMINIDEPENDENS
TrEMBL	A0A068U4N4	1e-157	A0A068U4N4_COFCA; Uncharacterized protein
STRING	EMJ00902	1e-144	(Prunus persica)
STRING	Solyc09g074690.2.1	1e-144	(Solanum lycopersicum)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5240	21	23

Publications ? help Back to Top
Chakrabortee S, et al. Luminidependens (LD) is an Arabidopsis protein with prion behavior. Proc. Natl. Acad. Sci. U.S.A., 2016. 113(21): p. 6065-70 [PMID:27114519]