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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4624_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | M-type_MADS | ||||||||
Protein Properties | Length: 328aa MW: 35313.2 Da PI: 9.8 | ||||||||
Description | M-type_MADS family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SRF-TF | 68.7 | 5.5e-22 | 19 | 66 | 2 | 49 |
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyey 49 +i+nksnrqvtfskRr+g++KKA+EL L +aeva i+fs+ gk++ y cra_locus_4624_iso_4_len_1211_ver_3 19 KIKNKSNRQVTFSKRRAGLFKKANELVALSGAEVAFIVFSPGGKVFSY 66 59*******************************************988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50066 | 25.469 | 10 | 70 | IPR002100 | Transcription factor, MADS-box |
SMART | SM00432 | 9.5E-31 | 10 | 69 | IPR002100 | Transcription factor, MADS-box |
CDD | cd00265 | 1.92E-36 | 11 | 80 | No hit | No description |
SuperFamily | SSF55455 | 2.75E-27 | 11 | 85 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-19 | 12 | 32 | IPR002100 | Transcription factor, MADS-box |
Pfam | PF00319 | 7.9E-24 | 19 | 66 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-19 | 32 | 47 | IPR002100 | Transcription factor, MADS-box |
PRINTS | PR00404 | 2.4E-19 | 47 | 68 | IPR002100 | Transcription factor, MADS-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0046983 | Molecular Function | protein dimerization activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 328 aa Download sequence Send to blast |
VMARIGKKTR GRQKIEMVKI KNKSNRQVTF SKRRAGLFKK ANELVALSGA EVAFIVFSPG 60 GKVFSYGHPD VETIIKRYLN RNSPNSVDQT DVERLVETHX XXXXXXXXXX XXXXXXXDLQ 120 KQVKQRKSEV QSTILNPYNL DFGFLGGGLA PYAEVNLNKV PFPMPEAPDA VFTNMLSHGS 180 VPNSSSSSGF EYAANFLRHN LMTSAAPAAG LSMFPGFDIT SMFPRSTGAS SSTNILPSNL 240 ATSETGTGSG SSSSMSHGLE ITPLVHPAGL MSYQVGASST YGGFDFTHVL SRNLRVPSFA 300 SLGFDQDGYN NENATAGTSS EAANNIGG |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1c7u_A | 2e-16 | 11 | 85 | 1 | 75 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |
1c7u_B | 2e-16 | 11 | 85 | 1 | 75 | MYOCYTE-SPECIFIC ENHANCER FACTOR 2A, C4 FORM |