PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_45433_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

C2H2

Protein Properties

Length: 281aa MW: 30459.7 Da PI: 8.3454

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_45433_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	14.5	0.0001	33	55	2	23
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 C+ Cg++F+ ++L++H+ H cra_locus_45433_iso_1_len_858_ver_3 33 ACSQCGEVFPKIESLQHHQAIrH 55 6******************9877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE pattern	PS00028	0	32	55	IPR007087	Zinc finger, C2H2
PROSITE profile	PS50157	9.016	32	60	IPR007087	Zinc finger, C2H2
SuperFamily	SSF56399	1.25E-23	57	277	No hit	No description
Gene3D	G3DSA:3.90.228.10	1.2E-11	58	277	IPR012317	Poly(ADP-ribose) polymerase, catalytic domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003950	Molecular Function	NAD+ ADP-ribosyltransferase activity
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 281 aa Download sequence Send to blast
SRGIQFRKLS GCYECHTIVD PTRYPLPRTT ICACSQCGEV FPKIESLQHH QAIRHAVSEL 60 GPEDSSRNIV EIIFKSSWLK KDNPICSIER ILKVHNTQRT IQRFEDCRDA VKIRANNNTK 120 KNPRCAADGN ELLRFHCTTL TCSLGARGSS SLCGSVPGCG VCTIIRHGFQ GNKSSGVRTT 180 ASSGRAHDCL GIPAAEAEGG RSSRAMLVCR VIAGRVKRVV DDTGAEAAPE EDAGASLAAP 240 LGSYDSLAGY AGIYSNLEEL YVFNPRAILP CFVVIYKALE S

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027094431.1	1e-177	uncharacterized protein LOC113714649
Refseq	XP_027148620.1	1e-177	uncharacterized protein LOC113749150
TrEMBL	A0A068UFR5	1e-174	A0A068UFR5_COFCA; Uncharacterized protein
STRING	VIT_18s0001g14130.t01	1e-161	(Vitis vinifera)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA5195	23	34