PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Gene Ontology |

Orthologous Group |

Basic Information? help Back to Top

TF ID

cra_locus_45063_iso_1

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

Trihelix

Protein Properties

Length: 275aa MW: 29995 Da PI: 6.9433

Description

Trihelix family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_45063_iso_1	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	trihelix	76.2	5e-24	60	167	1	86
trihelix 1 rWtkqevlaLiearremeerlrrgk.....................lkkplWeevskkmrergferspkqCkek 53 +Wt+++v++Li ++ +++++++++ +kk++W++vs++m ergf +sp+qC++k cra_locus_45063_iso_1_len_823_ver_3 60 KWTDNMVRLLIMIVFYIGDEVGSEGnvvvdpsgkkkggggggggvlQKKGKWKSVSRAMLERGFYVSPQQCEDK 133 7**************9999975447888888899999******************************* PP trihelix 54 wenlnkrykkikegekkr.tsessstcpyfdqle 86 +++lnkryk+++++ +k+ +++++++ +++++++ cra_locus_45063_iso_1_len_823_ver_3 134 FNDLNKRYKRVNDILGKGtACKVVEKQSLLESMD 167 **************55*********998 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF13837	4.0E-21	58	193	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0010629	Biological Process	negative regulation of gene expression
GO:1900037	Biological Process	regulation of cellular response to hypoxia
GO:0005634	Cellular Component	nucleus

Sequence ? help Back to Top
Protein Sequence Length: 275 aa Download sequence Send to blast
XPQPQPQTHQ MSAKQGYPFA PKPKNQTLAL SDDDEPAGLA ATENSADDGK RKMSPWQRMK 60 WTDNMVRLLI MIVFYIGDEV GSEGNVVVDP SGKKKGGGGG GGGVLQKKGK WKSVSRAMLE 120 RGFYVSPQQC EDKFNDLNKR YKRVNDILGK GTACKVVEKQ SLLESMDHLS PKMKEEVKKL 180 LNSKHLFFRE MCAYHNSCGH GVPSSSSGIA APEGATEAAA ASQGHHQQLQ PTRCQQHSTE 240 NASIAANLGR SEVEGSRLGK GGNQEEDDDD DEDDX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_011094441.1	1e-116	uncharacterized protein LOC105174138
TrEMBL	A0A251NAH1	1e-109	A0A251NAH1_PRUPE; Uncharacterized protein
TrEMBL	A0A314UXQ0	1e-109	A0A314UXQ0_PRUYE; Uncharacterized protein
TrEMBL	M5VPP0	1e-109	M5VPP0_PRUPE; Uncharacterized protein
STRING	XP_008241327.1	1e-111	(Prunus mume)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Asterids	OGEA6710	22	31