PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

cra_locus_4485_iso_5

Organism

Catharanthus roseus

Taxonomic ID

4058

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus

Family

CAMTA

Protein Properties

Length: 955aa MW: 106591 Da PI: 6.485

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
cra_locus_4485_iso_5	genome	MPGR	-

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	168.9	8.1e-53	12	127	2	116
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLK 74 +ke + rwlk+ e+ iL+n+e h +t+e+++rp+ gsl+L+n++++r+fr+DG++w++k+dg++v E+he+LK cra_locus_4485_iso_5_len_4174_ver_3 12 VKEaQVRWLKPPEVFFILKNHEDHMITHEPPQRPTGGSLFLFNKRVLRFFRRDGHTWRRKRDGRAVGEAHERLK 85 667699****************************************************************** PP CG-1 75 vggvevlycyYahseenptfqrrcywlLeeelekivlvhyle 116 vg+ve+++cyYah+e+np+fqrr+yw+L+ ++e+ivlvhy++ cra_locus_4485_iso_5_len_4174_ver_3 86 VGNVEAINCYYAHGEQNPSFQRRSYWMLDPAYEHIVLVHYRD 127 **************************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	77.11	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	5.6E-73	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	3.9E-46	14	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	2.3E-9	393	474	IPR013783	Immunoglobulin-like fold
Pfam	PF01833	3.2E-9	393	469	IPR002909	IPT domain
SuperFamily	SSF81296	8.68E-19	393	477	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	1.5E-13	590	683	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14.212	591	683	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	1.71E-14	595	685	IPR020683	Ankyrin repeat-containing domain
Pfam	PF12796	2.9E-7	612	684	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	7.10E-13	612	683	No hit	No description
SMART	SM00248	0.0032	624	656	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.392	624	656	IPR002110	Ankyrin repeat
SMART	SM00248	2900	663	692	IPR002110	Ankyrin repeat
SMART	SM00015	9.4	741	763	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.821	742	770	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	8.5E-6	789	845	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	4.5	797	819	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.584	798	827	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	0.02	800	818	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.0014	820	842	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.736	822	846	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	2.9E-5	823	842	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0005829	Cellular Component	cytosol
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 955 aa Download sequence Send to blast
MSQSGYNFGD LVKEAQVRWL KPPEVFFILK NHEDHMITHE PPQRPTGGSL FLFNKRVLRF 60 FRRDGHTWRR KRDGRAVGEA HERLKVGNVE AINCYYAHGE QNPSFQRRSY WMLDPAYEHI 120 VLVHYRDINE GRNSAGIISQ FSPASLSSLS QSPSSYTTQQ PGSSALISES FEQYQNLSSP 180 ASVEISSDAV IKTKGVNYSD NVERVDEVNS SSGLEMSQAL RMIEHQLSLN DDCLKEIDPF 240 CSENENSDLE NIIHDPSSSA STPGYMMQNH HQLGYEVNDW KNMLDVYSED VVSQVRHADK 300 VNENGNLLKS SMKGPAAGQE SSSWLNFTGS NSQMSSVPVT KEVEDFQYPV YSSNTGTYVN 360 NQDHYTTLFD QGQIGISFED DVSLTISQKQ RFTIREISPN WGYASETTKV VIIGSFLCDP 420 LECTWTCMFG DVEVPVQIIQ DGVISCHAPP HLPGKVTLCV TSANRESCSE VREFDYRVKP 480 SVCSHCSQPD ADATRSPEEL LLLVRFVQLL LSAASVQKGD SSESGIDLLG KLKTGEDSWG 540 QVIEALLVGS STSSVTKDWL LQELLKDKLQ NWLSSRSEEI SSHTSCYLSK KEQGIIHMIA 600 GLGLEWALHP VLKSGVSVNF RDINGWTALH WAARFGREKM VAALIASGAL AGAVTDPTPR 660 DPIGKTAAFI AATYGHKGLA GYLSEVALTS HLSSLTLEES ELSKGSADVE VERTLSSVPK 720 TNPLTNEDQL SLKDTLAAVR NAAQAAARIQ SAFRAHSFRK RLHRQASSAG LDEYGLLSDD 780 VQGLSAASKL AFRNSRDYNS AALSIQKKYR GWKGRKDFLA FRQKVVKIQA HVRGYQVRKH 840 YKVCWAVGIL EKVVLRWRRR GVGLRGFRNE NEPIDDSEDE DILRVFRKQK VDAAIDEAVS 900 RVLSMVESPN ARQQYRRLLE KYRQAKAALQ ESESETASAS YGFSNMENDD IYLLQ

Sequence ? help Back to Top

Protein Sequence Length: 955 aa Download sequence Send to blast

MSQSGYNFGD LVKEAQVRWL KPPEVFFILK NHEDHMITHE PPQRPTGGSL FLFNKRVLRF  60
FRRDGHTWRR KRDGRAVGEA HERLKVGNVE AINCYYAHGE QNPSFQRRSY WMLDPAYEHI  120
VLVHYRDINE GRNSAGIISQ FSPASLSSLS QSPSSYTTQQ PGSSALISES FEQYQNLSSP  180
ASVEISSDAV IKTKGVNYSD NVERVDEVNS SSGLEMSQAL RMIEHQLSLN DDCLKEIDPF  240
CSENENSDLE NIIHDPSSSA STPGYMMQNH HQLGYEVNDW KNMLDVYSED VVSQVRHADK  300
VNENGNLLKS SMKGPAAGQE SSSWLNFTGS NSQMSSVPVT KEVEDFQYPV YSSNTGTYVN  360
NQDHYTTLFD QGQIGISFED DVSLTISQKQ RFTIREISPN WGYASETTKV VIIGSFLCDP  420
LECTWTCMFG DVEVPVQIIQ DGVISCHAPP HLPGKVTLCV TSANRESCSE VREFDYRVKP  480
SVCSHCSQPD ADATRSPEEL LLLVRFVQLL LSAASVQKGD SSESGIDLLG KLKTGEDSWG  540
QVIEALLVGS STSSVTKDWL LQELLKDKLQ NWLSSRSEEI SSHTSCYLSK KEQGIIHMIA  600
GLGLEWALHP VLKSGVSVNF RDINGWTALH WAARFGREKM VAALIASGAL AGAVTDPTPR  660
DPIGKTAAFI AATYGHKGLA GYLSEVALTS HLSSLTLEES ELSKGSADVE VERTLSSVPK  720
TNPLTNEDQL SLKDTLAAVR NAAQAAARIQ SAFRAHSFRK RLHRQASSAG LDEYGLLSDD  780
VQGLSAASKL AFRNSRDYNS AALSIQKKYR GWKGRKDFLA FRQKVVKIQA HVRGYQVRKH  840
YKVCWAVGIL EKVVLRWRRR GVGLRGFRNE NEPIDDSEDE DILRVFRKQK VDAAIDEAVS  900
RVLSMVESPN ARQQYRRLLE KYRQAKAALQ ESESETASAS YGFSNMENDD IYLLQ

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_027097389.1	0.0	calmodulin-binding transcription activator 4-like isoform X2
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A068UXT9	0.0	A0A068UXT9_COFCA; Uncharacterized protein
STRING	XP_009617256.1	0.0	(Nicotiana tomentosiformis)

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]