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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_4485_iso_4 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | CAMTA | ||||||||
Protein Properties | Length: 989aa MW: 110454 Da PI: 6.734 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 168.8 | 8.5e-53 | 46 | 161 | 2 | 116 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLK 74 +ke + rwlk+ e+ iL+n+e h +t+e+++rp+ gsl+L+n++++r+fr+DG++w++k+dg++v E+he+LK cra_locus_4485_iso_4_len_4393_ver_3 46 VKEaQVRWLKPPEVFFILKNHEDHMITHEPPQRPTGGSLFLFNKRVLRFFRRDGHTWRRKRDGRAVGEAHERLK 119 667699******************************************************************** PP CG-1 75 vggvevlycyYahseenptfqrrcywlLeeelekivlvhyle 116 vg+ve+++cyYah+e+np+fqrr+yw+L+ ++e+ivlvhy++ cra_locus_4485_iso_4_len_4393_ver_3 120 VGNVEAINCYYAHGEQNPSFQRRSYWMLDPAYEHIVLVHYRD 161 ****************************************98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.11 | 42 | 168 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.6E-73 | 45 | 163 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 4.1E-46 | 48 | 161 | IPR005559 | CG-1 DNA-binding domain |
Gene3D | G3DSA:2.60.40.10 | 2.4E-9 | 427 | 508 | IPR013783 | Immunoglobulin-like fold |
Pfam | PF01833 | 3.3E-9 | 427 | 503 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 9.1E-19 | 427 | 511 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:1.25.40.20 | 1.5E-13 | 624 | 717 | IPR020683 | Ankyrin repeat-containing domain |
PROSITE profile | PS50297 | 14.212 | 625 | 717 | IPR020683 | Ankyrin repeat-containing domain |
SuperFamily | SSF48403 | 1.87E-14 | 629 | 719 | IPR020683 | Ankyrin repeat-containing domain |
CDD | cd00204 | 7.46E-13 | 646 | 717 | No hit | No description |
Pfam | PF12796 | 3.0E-7 | 646 | 718 | IPR020683 | Ankyrin repeat-containing domain |
SMART | SM00248 | 0.0032 | 658 | 690 | IPR002110 | Ankyrin repeat |
PROSITE profile | PS50088 | 10.392 | 658 | 690 | IPR002110 | Ankyrin repeat |
SMART | SM00248 | 2900 | 697 | 726 | IPR002110 | Ankyrin repeat |
SMART | SM00015 | 9.4 | 775 | 797 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.821 | 776 | 804 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 9.82E-6 | 823 | 879 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 4.5 | 831 | 853 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.584 | 832 | 861 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.021 | 834 | 852 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0014 | 854 | 876 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.736 | 856 | 880 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 3.0E-5 | 857 | 876 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 989 aa Download sequence Send to blast |
MQHGLSLISL SFMSASHLLR NACPYGRIFM KXPHCFISGY NFGDLVKEAQ VRWLKPPEVF 60 FILKNHEDHM ITHEPPQRPT GGSLFLFNKR VLRFFRRDGH TWRRKRDGRA VGEAHERLKV 120 GNVEAINCYY AHGEQNPSFQ RRSYWMLDPA YEHIVLVHYR DINEGRNSAG IISQFSPASL 180 SSLSQSPSSY TTQQPGSSAL ISESFEQYQN LSSPASVEIS SDAVIKTKGV NYSDNVERVD 240 EVNSSSGLEM SQALRMIEHQ LSLNDDCLKE IDPFCSENEN SDLENIIHDP SSSASTPGYM 300 MQNHHQLGYE VNDWKNMLDV YSEDVVSQVR HADKVNENGN LLKSSMKGPA AGQESSSWLN 360 FTGSNSQMSS VPVTKEVEDF QYPVYSSNTG TYVNNQDHYT TLFDQGQIGI SFEDDVSLTI 420 SQKQRFTIRE ISPNWGYASE TTKVVIIGSF LCDPLECTWT CMFGDVEVPV QIIQDGVISC 480 HAPPHLPGKV TLCVTSANRE SCSEVREFDY RVKPSVCSHC SQPDADATRS PEELLLLVRF 540 VQLLLSAASV QKGDSSESGI DLLGKLKTGE DSWGQVIEAL LVGSSTSSVT KDWLLQELLK 600 DKLQNWLSSR SEEISSHTSC YLSKKEQGII HMIAGLGLEW ALHPVLKSGV SVNFRDINGW 660 TALHWAARFG REKMVAALIA SGALAGAVTD PTPRDPIGKT AAFIAATYGH KGLAGYLSEV 720 ALTSHLSSLT LEESELSKGS ADVEVERTLS SVPKTNPLTN EDQLSLKDTL AAVRNAAQAA 780 ARIQSAFRAH SFRKRLHRQA SSAGLDEYGL LSDDVQGLSA ASKLAFRNSR DYNSAALSIQ 840 KKYRGWKGRK DFLAFRQKVV KIQAHVRGYQ VRKHYKVCWA VGILEKVVLR WRRRGVGLRG 900 FRNENEPIDD SEDEDILRVF RKQKVDAAID EAVSRVLSMV ESPNARQQYR RLLEKYRQAK 960 AALQESESET ASASYGFSNM ENDDIYLLQ |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_027097389.1 | 0.0 | calmodulin-binding transcription activator 4-like isoform X2 | ||||
Swissprot | Q9FYG2 | 0.0 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A068UXT9 | 0.0 | A0A068UXT9_COFCA; Uncharacterized protein | ||||
STRING | XP_009617256.1 | 0.0 | (Nicotiana tomentosiformis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA3932 | 20 | 37 |
Publications ? help Back to Top | |||
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