![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | cra_locus_4485_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
|
||||||||
Family | CAMTA | ||||||||
Protein Properties | Length: 809aa MW: 90896.5 Da PI: 6.2966 | ||||||||
Description | CAMTA family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | CG-1 | 169.2 | 6.3e-53 | 12 | 127 | 2 | 116 |
CG-1 2 lke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLK 74 +ke + rwlk+ e+ iL+n+e h +t+e+++rp+ gsl+L+n++++r+fr+DG++w++k+dg++v E+he+LK cra_locus_4485_iso_1_len_3736_ver_3 12 VKEaQVRWLKPPEVFFILKNHEDHMITHEPPQRPTGGSLFLFNKRVLRFFRRDGHTWRRKRDGRAVGEAHERLK 85 667699******************************************************************** PP CG-1 75 vggvevlycyYahseenptfqrrcywlLeeelekivlvhyle 116 vg+ve+++cyYah+e+np+fqrr+yw+L+ ++e+ivlvhy++ cra_locus_4485_iso_1_len_3736_ver_3 86 VGNVEAINCYYAHGEQNPSFQRRSYWMLDPAYEHIVLVHYRD 127 ****************************************98 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS51437 | 77.11 | 8 | 134 | IPR005559 | CG-1 DNA-binding domain |
SMART | SM01076 | 5.6E-73 | 11 | 129 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF03859 | 3.1E-46 | 14 | 127 | IPR005559 | CG-1 DNA-binding domain |
Pfam | PF01833 | 2.6E-9 | 393 | 469 | IPR002909 | IPT domain |
SuperFamily | SSF81296 | 7.0E-19 | 393 | 477 | IPR014756 | Immunoglobulin E-set |
Gene3D | G3DSA:2.60.40.10 | 1.9E-9 | 393 | 474 | IPR013783 | Immunoglobulin-like fold |
SMART | SM00015 | 9.4 | 595 | 617 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.821 | 596 | 624 | IPR000048 | IQ motif, EF-hand binding site |
SuperFamily | SSF52540 | 6.11E-6 | 643 | 699 | IPR027417 | P-loop containing nucleoside triphosphate hydrolase |
SMART | SM00015 | 4.5 | 651 | 673 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 7.584 | 652 | 681 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 0.016 | 654 | 672 | IPR000048 | IQ motif, EF-hand binding site |
SMART | SM00015 | 0.0014 | 674 | 696 | IPR000048 | IQ motif, EF-hand binding site |
PROSITE profile | PS50096 | 8.736 | 676 | 700 | IPR000048 | IQ motif, EF-hand binding site |
Pfam | PF00612 | 2.4E-5 | 677 | 696 | IPR000048 | IQ motif, EF-hand binding site |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0005829 | Cellular Component | cytosol | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 809 aa Download sequence Send to blast |
MSQSGYNFGD LVKEAQVRWL KPPEVFFILK NHEDHMITHE PPQRPTGGSL FLFNKRVLRF 60 FRRDGHTWRR KRDGRAVGEA HERLKVGNVE AINCYYAHGE QNPSFQRRSY WMLDPAYEHI 120 VLVHYRDINE GRNSAGIISQ FSPASLSSLS QSPSSYTTQQ PGSSALISES FEQYQNLSSP 180 ASVEISSDAV IKTKGVNYSD NVERVDEVNS SSGLEMSQAL RMIEHQLSLN DDCLKEIDPF 240 CSENENSDLE NIIHDPSSSA STPGYMMQNH HQLGYEVNDW KNMLDVYSED VVSQVRHADK 300 VNENGNLLKS SMKGPAAGQE SSSWLNFTGS NSQMSSVPVT KEVEDFQYPV YSSNTGTYVN 360 NQDHYTTLFD QGQIGISFED DVSLTISQKQ RFTIREISPN WGYASETTKV VIIGSFLCDP 420 LECTWTCMFG DVEVPVQIIQ DGVISCHAPP HLPGKVTLCV TSANRESCSE VREFDYRVKP 480 SVCSHCSQPD ADATRSPEEL LLLVRFVQLL LSAASVQKGD SSESGIDLLG KLKTGYLSEV 540 ALTSHLSSLT LEESELSKGS ADVEVERTLS SVPKTNPLTN EDQLSLKDTL AAVRNAAQAA 600 ARIQSAFRAH SFRKRLHRQA SSAGLDEYGL LSDDVQGLSA ASKLAFRNSR DYNSAALSIQ 660 KKYRGWKGRK DFLAFRQKVV KIQAHVRGYQ VRKHYKVCWA VGILEKVVLR WRRRGVGLRG 720 FRNENEPIDD SEDEDILRVF RKQKVDAAID EAVSRVLSMV ESPNARQQYR RLLEKYRQAK 780 AALQESESET ASASYGFSNM ENDDIYLLQ |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250|UniProtKB:Q8GSA7, ECO:0000269|PubMed:25039701, ECO:0000305|PubMed:11925432}. |
Regulation -- Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269|PubMed:12218065, ECO:0000269|PubMed:28351986}. |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_027151349.1 | 0.0 | calmodulin-binding transcription activator 4 isoform X3 | ||||
Swissprot | Q9FYG2 | 4e-93 | CMTA4_ARATH; Calmodulin-binding transcription activator 4 | ||||
TrEMBL | A0A068UXT9 | 0.0 | A0A068UXT9_COFCA; Uncharacterized protein | ||||
STRING | Solyc05g015650.2.1 | 0.0 | (Solanum lycopersicum) |
Publications ? help Back to Top | |||
---|---|---|---|
|