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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | cra_locus_43336_iso_1 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; lamiids; Gentianales; Apocynaceae; Rauvolfioideae; Vinceae; Catharanthinae; Catharanthus
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Family | HSF | ||||||||
Protein Properties | Length: 77aa MW: 8830.96 Da PI: 4.407 | ||||||||
Description | HSF family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | HSF_DNA-bind | 65.9 | 8.9e-21 | 25 | 77 | 2 | 54 |
HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHH CS HSF_DNA-bind 2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFv 54 Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFv cra_locus_43336_iso_1_len_345_ver_3 25 FLTKTYQLVDDPSTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFV 77 9***************************************************8 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:1.10.10.10 | 7.9E-23 | 17 | 77 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
SMART | SM00415 | 1.2E-11 | 21 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
SuperFamily | SSF46785 | 3.27E-19 | 22 | 77 | IPR011991 | Winged helix-turn-helix DNA-binding domain |
PRINTS | PR00056 | 1.5E-12 | 25 | 48 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Pfam | PF00447 | 3.8E-17 | 25 | 77 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
PRINTS | PR00056 | 1.5E-12 | 63 | 75 | IPR000232 | Heat shock factor (HSF)-type, DNA-binding |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 77 aa Download sequence Send to blast |
MALMLDNCEG ILLSLDSHKS VPAPFLTKTY QLVDDPSTDH IVSWGEDDTT FVVWRPPEFA 60 RDLLPNYFKH NNFSSFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5hdg_A | 1e-12 | 21 | 77 | 7 | 62 | Heat shock factor protein 1 |
5hdn_A | 1e-12 | 21 | 77 | 7 | 62 | Heat shock factor protein 1 |
5hdn_B | 1e-12 | 21 | 77 | 7 | 62 | Heat shock factor protein 1 |
5hdn_C | 1e-12 | 21 | 77 | 7 | 62 | Heat shock factor protein 1 |
5hdn_D | 1e-12 | 21 | 77 | 7 | 62 | Heat shock factor protein 1 |
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Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcriptional activator that specifically binds DNA of heat shock promoter elements (HSE). {ECO:0000269|PubMed:16202242}. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006354868.1 | 2e-49 | PREDICTED: heat stress transcription factor B-4 | ||||
Refseq | XP_022940704.1 | 6e-50 | heat stress transcription factor B-4-like, partial | ||||
Swissprot | Q7XHZ0 | 4e-37 | HFB4B_ORYSJ; Heat stress transcription factor B-4b | ||||
TrEMBL | A0A068U135 | 9e-49 | A0A068U135_COFCA; Uncharacterized protein | ||||
TrEMBL | A0A2G2VBY3 | 2e-48 | A0A2G2VBY3_CAPBA; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A2G2Y0E5 | 2e-48 | A0A2G2Y0E5_CAPAN; Heat stress transcription factor B-4 | ||||
TrEMBL | A0A2G3CQ07 | 2e-48 | A0A2G3CQ07_CAPCH; Heat stress transcription factor B-4 | ||||
STRING | Aquca_015_00048.1 | 5e-49 | (Aquilegia coerulea) | ||||
STRING | evm.model.supercontig_49.32 | 3e-50 | (Carica papaya) | ||||
STRING | PGSC0003DMT400020554 | 8e-49 | (Solanum tuberosum) | ||||
STRING | XP_010112180.1 | 8e-49 | (Morus notabilis) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Asterids | OGEA2721 | 24 | 50 |
Publications ? help Back to Top | |||
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